1 GGDEF#1
135-276 aa · 142 aa · 21.2% of protein
Raw token
GGDEF:135:4.32e-38:276:153:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS04280
Response regulator, RpfG family
Blautia faecis · GCF_032142815
ClassRRTypeRpfGLength670 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS04280Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length670 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage346 / 670 aa (51.6%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa670 aa
Domain-by-domain annotation3 items
2 Response_reg#2
308-412 aa · 105 aa · 15.7% of protein
Raw token
Response_reg:308:1.65e-25:412:106:1113 HD#3
503-601 aa · 99 aa · 14.8% of protein
Raw token
HD:503:0.00000000000816:601:99:110- Raw architecture: GGDEF:135:4.32e-38:276:153:160#Response_reg:308:1.65e-25:412:106:111#HD:503:0.00000000000816:601:99:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000002.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span248016-251736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_04280RefSeq proteinWP_313718066.1
Context group ID
GCF_032142815::NZ_JAVSND010000002.1::G00018Context members
RO865_RS04280RO865_RS04285
Partner locus tags
RO865_RS04280RO865_RS04285
Partner old locus tags
RO865_04280RO865_04285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_313718066.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS04280Primary locus identifier stored in the genes table.
Old locus tagRO865_04280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000002.1Sequence record reported by the local genomic context database.
Genomic interval248 016-250 028 nt2 013 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span248 016-251 736 ntGCF_032142815::NZ_JAVSND010000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000002.1All displayed genes belong to this local TCS context.
Neighborhood span248 016-251 736 nt3 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
248 016 nt251 736 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS04280GCF_032142815#RO865_RS04280
RRRpfGCurrent focus
248 016-250 028 nt · Forward (+)
RO865_RS04285GCF_032142815#RO865_RS04285
HKClassic
250 150-251 736 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032142815#RO865_RS04280The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0034207
Simplified PFAM architecture for RROC_0034207
PFAM domain coverage: 386 / 670 aa (57.6%)
1 aa670 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[135-279] | Response_reg[308-418] | HD_5[492-621]
- Domain count: 3
- Matched identifier: RROC_0034207
- Positioned domains: GGDEF 135-279 ; Response_reg 308-418 ; HD_5 492-621
Cluster members and taxonomy
Representative gene: GCF_032142815#RO865_RS04280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key