1 Response_reg#1
7-120 aa · 114 aa · 46.3% of protein
Raw token
Response_reg:7:0.0000000000000198:120:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS04200
Response regulator LytTR family
Blautia faecis · GCF_032142815
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032142815#RO865_RS04200Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 246 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-229 aa · 85 aa · 34.6% of protein
Raw token
LytTR:145:0.00000000000000557:229:90:98- Raw architecture: Response_reg:7:0.0000000000000198:120:117:111#LytTR:145:0.00000000000000557:229:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032142815::NZ_JAVSND010000002.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span219664-220404Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_04200RefSeq proteinWP_173718010.1
Context group ID
GCF_032142815::NZ_JAVSND010000002.1::G00016Context members
RO865_RS04200
Partner locus tags
RO865_RS04200
Partner old locus tags
RO865_04200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173718010.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS04200Primary locus identifier stored in the genes table.
Old locus tagRO865_04200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000002.1Sequence record reported by the local genomic context database.
Genomic interval219 664-220 404 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span219 664-220 404 ntGCF_032142815::NZ_JAVSND010000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000002.1All displayed genes belong to this local TCS context.
Neighborhood span219 664-220 404 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 664 nt220 404 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RO865_RS04200GCF_032142815#RO865_RS04200
RRLytTRCurrent focus
219 664-220 404 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS02560Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0776856
Simplified PFAM architecture for RROC_0776856
PFAM domain coverage: 193 / 246 aa (78.5%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[13-119] | LytTR[143-228]
- Domain count: 2
- Matched identifier: RROC_0776856
- Positioned domains: Response_reg 13-119 ; LytTR 143-228
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS02560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key