1 dCache_1#1
186-297 aa · 112 aa · 17.9% of protein
Raw token
dCache_1:186:0.00000056:297:115:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS04035
Histidine kinase, Classic
Blautia faecis · GCF_032142815
ClassHKTypeClassicLength626 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS04035Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length626 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage376 / 626 aa (60.1%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa626 aa
Domain-by-domain annotation4 items
2 HAMP#2
317-385 aa · 69 aa · 11.0% of protein
Raw token
HAMP:317:0.0000000848:385:69:693 His_kinase#3
409-486 aa · 78 aa · 12.5% of protein
Raw token
His_kinase:409:1.95e-23:486:78:804 HATPase_c#4
504-620 aa · 117 aa · 18.7% of protein
Raw token
HATPase_c:504:0.00000165:620:117:109- Raw architecture: dCache_1:186:0.00000056:297:115:195#HAMP:317:0.0000000848:385:69:69#His_kinase:409:1.95e-23:486:78:80#HATPase_c:504:0.00000165:620:117:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000002.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span178042-180644Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_04035RefSeq proteinWP_173770560.1
Context group ID
GCF_032142815::NZ_JAVSND010000002.1::G00014Context members
RO865_RS04035RO865_RS04040
Partner locus tags
RO865_RS04035RO865_RS04040
Partner old locus tags
RO865_04035RO865_04040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173770560.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS04035Primary locus identifier stored in the genes table.
Old locus tagRO865_04035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000002.1Sequence record reported by the local genomic context database.
Genomic interval178 042-179 922 nt1 881 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span178 042-180 644 ntGCF_032142815::NZ_JAVSND010000002.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000002.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000002.1All displayed genes belong to this local TCS context.
Neighborhood span178 042-180 644 nt2 603 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
178 042 nt180 644 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS04035GCF_032142815#RO865_RS04035
HKClassicCurrent focus
178 042-179 922 nt · Forward (+)
RO865_RS04040GCF_032142815#RO865_RS04040
RRunclassified
179 919-180 644 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302375#G5A01_RS00465Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0958072
Simplified PFAM architecture for HKOC_0958072
PFAM domain coverage: 194 / 626 aa (31.0%)
1 aa626 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[409-484] | HATPase_c[504-621]
- Domain count: 2
- Matched identifier: HKOC_0958072
- Positioned domains: His_kinase 409-484 ; HATPase_c 504-621
Cluster members and taxonomy
Representative gene: GCF_013302375#G5A01_RS00465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key