1 CHASE#1
110-198 aa · 89 aa · 13.0% of protein
Raw token
CHASE:110:0.0000000000000258:198:98:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS03940
Histidine kinase, Hybrid
Blautia faecis · GCF_032142815
ClassHKTypeHybridLength686 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032142815#RO865_RS03940Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_cResponse_reg
Protein length686 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage382 / 686 aa (55.7%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa686 aa
Domain-by-domain annotation4 items
2 HisKA#2
309-375 aa · 67 aa · 9.8% of protein
Raw token
HisKA:309:2.25e-17:375:67:643 HATPase_c#3
422-533 aa · 112 aa · 16.3% of protein
Raw token
HATPase_c:422:1.98e-29:533:112:1094 Response_reg#4
565-678 aa · 114 aa · 16.6% of protein
Raw token
Response_reg:565:8.74e-29:678:114:111- Raw architecture: CHASE:110:0.0000000000000258:198:98:183#HisKA:309:2.25e-17:375:67:64#HATPase_c:422:1.98e-29:533:112:109#Response_reg:565:8.74e-29:678:114:111
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032142815::NZ_JAVSND010000002.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span156971-159031Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_03940RefSeq proteinWP_195379360.1
Context group ID
GCF_032142815::NZ_JAVSND010000002.1::G00013Context members
RO865_RS03940
Partner locus tags
RO865_RS03940
Partner old locus tags
RO865_03940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195379360.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS03940Primary locus identifier stored in the genes table.
Old locus tagRO865_03940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000002.1Sequence record reported by the local genomic context database.
Genomic interval156 971-159 031 nt2 061 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span156 971-159 031 ntGCF_032142815::NZ_JAVSND010000002.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000002.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000002.1All displayed genes belong to this local TCS context.
Neighborhood span156 971-159 031 nt2 061 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 971 nt159 031 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RO865_RS03940GCF_032142815#RO865_RS03940
HKHybridCurrent focus
156 971-159 031 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551645#I2D69_RS02785Use this link to inspect the representative gene detail.
PFAM architectureCHASE + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0801973
Simplified PFAM architecture for HKOC_0801973
PFAM domain coverage: 402 / 686 aa (58.6%)
1 aa686 aa
CHASEHisKAHATPase_cResponse_reg
- Simplified architecture: CHASE + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE[109-213] | HisKA[309-375] | HATPase_c[422-536] | Response_reg[565-679]
- Domain count: 4
- Matched identifier: HKOC_0801973
- Positioned domains: CHASE 109-213 ; HisKA 309-375 ; HATPase_c 422-536 ; Response_reg 565-679
Cluster members and taxonomy
Representative gene: GCF_015551645#I2D69_RS02785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key