1 HAMP#1
70-139 aa · 70 aa · 18.3% of protein
Raw token
HAMP:70:0.00000000000000588:139:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS03160
Histidine kinase, Classic
Blautia faecis · GCF_032142815
ClassHKTypeClassicLength382 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS03160Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length382 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 382 aa (66.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa382 aa
Domain-by-domain annotation3 items
2 HisKA#2
150-217 aa · 68 aa · 17.8% of protein
Raw token
HisKA:150:0.00000000000000209:217:68:643 HATPase_c#3
264-377 aa · 114 aa · 29.8% of protein
Raw token
HATPase_c:264:4.96e-32:377:114:109- Raw architecture: HAMP:70:0.00000000000000588:139:70:69#HisKA:150:0.00000000000000209:217:68:64#HATPase_c:264:4.96e-32:377:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000002.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12666-14500Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_03160RefSeq proteinWP_173736371.1
Context group ID
GCF_032142815::NZ_JAVSND010000002.1::G00009Context members
RO865_RS03155RO865_RS03160
Partner locus tags
RO865_RS03155RO865_RS03160
Partner old locus tags
RO865_03155RO865_03160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173736371.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS03160Primary locus identifier stored in the genes table.
Old locus tagRO865_03160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000002.1Sequence record reported by the local genomic context database.
Genomic interval13 352-14 500 nt1 149 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 666-14 500 ntGCF_032142815::NZ_JAVSND010000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000002.1All displayed genes belong to this local TCS context.
Neighborhood span12 666-14 500 nt1 835 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 666 nt14 500 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS03155GCF_032142815#RO865_RS03155
RROmpR
12 666-13 355 nt · Reverse (-)
RO865_RS03160GCF_032142815#RO865_RS03160
HKClassicCurrent focus
13 352-14 500 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013304475#G5B28_RS18960Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2593396
Simplified PFAM architecture for HKOC_2593396
PFAM domain coverage: 230 / 382 aa (60.2%)
1 aa382 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[87-139] | HisKA[151-216] | HATPase_c[265-375]
- Domain count: 3
- Matched identifier: HKOC_2593396
- Positioned domains: HAMP 87-139 ; HisKA 151-216 ; HATPase_c 265-375
Cluster members and taxonomy
Representative gene: GCF_013304475#G5B28_RS18960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key