1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.000000171:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS02775
Histidine kinase, Classic
Blautia faecis · GCF_032142815
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS02775Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 343 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-343 aa · 103 aa · 30.0% of protein
Raw token
HATPase_c:241:4.44e-27:343:103:109- Raw architecture: HisKA:123:0.000000171:189:67:64#HATPase_c:241:4.44e-27:343:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span551046-552763Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_02775RefSeq proteinWP_055059560.1
Context group ID
GCF_032142815::NZ_JAVSND010000001.1::G00007Context members
RO865_RS02770RO865_RS02775
Partner locus tags
RO865_RS02770RO865_RS02775
Partner old locus tags
RO865_02770RO865_02775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055059560.1Primary protein accession used for annex mappings.
UniProt accessionA0A174RNE3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174RNE3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS02775Primary locus identifier stored in the genes table.
Old locus tagRO865_02775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000001.1Sequence record reported by the local genomic context database.
Genomic interval551 732-552 763 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span551 046-552 763 ntGCF_032142815::NZ_JAVSND010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000001.1All displayed genes belong to this local TCS context.
Neighborhood span551 046-552 763 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
551 046 nt552 763 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS02770GCF_032142815#RO865_RS02770
RROmpR
551 046-551 735 nt · Forward (+)
RO865_RS02775GCF_032142815#RO865_RS02775
HKClassicCurrent focus
551 732-552 763 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS04825Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828271
Simplified PFAM architecture for HKOC_2828271
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2828271
- Positioned domains: HisKA 125-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS04825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key