1 HAMP#1
315-381 aa · 67 aa · 10.6% of protein
Raw token
HAMP:315:0.0000000000377:381:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS01855
Histidine kinase, Classic
Blautia faecis · GCF_032142815
ClassHKTypeClassicLength633 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS01855Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length633 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 633 aa (39.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa633 aa
Domain-by-domain annotation3 items
2 His_kinase#2
397-475 aa · 79 aa · 12.5% of protein
Raw token
His_kinase:397:1.89e-27:475:79:803 HATPase_c#3
493-594 aa · 102 aa · 16.1% of protein
Raw token
HATPase_c:493:0.000000000000487:594:111:109- Raw architecture: HAMP:315:0.0000000000377:381:67:69#His_kinase:397:1.89e-27:475:79:80#HATPase_c:493:0.000000000000487:594:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span373148-376541Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_01855RefSeq proteinWP_313717930.1
Context group ID
GCF_032142815::NZ_JAVSND010000001.1::G00004Context members
RO865_RS01850RO865_RS01855
Partner locus tags
RO865_RS01850RO865_RS01855
Partner old locus tags
RO865_01850RO865_01855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_313717930.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS01855Primary locus identifier stored in the genes table.
Old locus tagRO865_01855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000001.1Sequence record reported by the local genomic context database.
Genomic interval374 640-376 541 nt1 902 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span373 148-376 541 ntGCF_032142815::NZ_JAVSND010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000001.1All displayed genes belong to this local TCS context.
Neighborhood span373 148-376 541 nt3 394 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
373 148 nt376 541 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS01850GCF_032142815#RO865_RS01850
RRunclassified
373 148-374 749 nt · Forward (+)
RO865_RS01855GCF_032142815#RO865_RS01855
HKClassicCurrent focus
374 640-376 541 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032142815#RO865_RS01855The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0941556
Simplified PFAM architecture for HKOC_0941556
PFAM domain coverage: 226 / 633 aa (35.7%)
1 aa633 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[330-380] | His_kinase[397-472] | HATPase_c[495-593]
- Domain count: 3
- Matched identifier: HKOC_0941556
- Positioned domains: HAMP 330-380 ; His_kinase 397-472 ; HATPase_c 495-593
Cluster members and taxonomy
Representative gene: GCF_032142815#RO865_RS01855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key