1 HisKA#1
124-189 aa · 66 aa · 19.2% of protein
Raw token
HisKA:124:0.000000315:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC29_RS17845
Histidine kinase, Classic
Clostridioides difficile · GCF_032081295
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032081295#XC29_RS17845Stable P2CS identifier used across views.
GenomeGCF_032081295Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 343 aa (48.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:3.52e-24:341:101:109- Raw architecture: HisKA:124:0.000000315:189:66:64#HATPase_c:241:3.52e-24:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032081295::NZ_LIEQ01000064.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span370628-372335Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXC29_17765RefSeq proteinWP_074098700.1
Context group ID
GCF_032081295::NZ_LIEQ01000064.1::G00053Context members
XC29_RS17840XC29_RS17845
Partner locus tags
XC29_RS17840XC29_RS17845
Partner old locus tags
XC29_17760XC29_17765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074098700.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC29_RS17845Primary locus identifier stored in the genes table.
Old locus tagXC29_17765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LIEQ01000064.1Sequence record reported by the local genomic context database.
Genomic interval371 304-372 335 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span370 628-372 335 ntGCF_032081295::NZ_LIEQ01000064.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032081295::NZ_LIEQ01000064.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LIEQ01000064.1All displayed genes belong to this local TCS context.
Neighborhood span370 628-372 335 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
370 628 nt372 335 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
XC29_RS17840GCF_032081295#XC29_RS17840
RROmpR
370 628-371 314 nt · Forward (+)
XC29_RS17845GCF_032081295#XC29_RS17845
HKClassicCurrent focus
371 304-372 335 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032081295#XC29_RS17845The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2830557
Simplified PFAM architecture for HKOC_2830557
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[236-342]
- Domain count: 2
- Matched identifier: HKOC_2830557
- Positioned domains: HisKA 124-189 ; HATPase_c 236-342
Cluster members and taxonomy
Representative gene: GCF_032081295#XC29_RS17845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081295
AssemblyASM3208129v1 · Scaffoldhaploid
Genome composition4 276 346 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key