1 Response_reg#1
3-112 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:3:8.97e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC29_RS01360
Response regulator OmpR family
Clostridioides difficile · GCF_032081295
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032081295#XC29_RS01360Stable P2CS identifier used across views.
GenomeGCF_032081295Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:150:1.08e-27:226:77:77- Raw architecture: Response_reg:3:8.97e-32:112:111:111#Trans_reg_C:150:1.08e-27:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032081295::NZ_LIEQ01000015.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4242-5848Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXC29_01290RefSeq proteinWP_074438758.1
Context group ID
GCF_032081295::NZ_LIEQ01000015.1::G00003Context members
XC29_RS01355XC29_RS01360
Partner locus tags
XC29_RS01355XC29_RS01360
Partner old locus tags
XC29_01285XC29_01290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074438758.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC29_RS01360Primary locus identifier stored in the genes table.
Old locus tagXC29_01290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LIEQ01000015.1Sequence record reported by the local genomic context database.
Genomic interval5 159-5 848 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 242-5 848 ntGCF_032081295::NZ_LIEQ01000015.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032081295::NZ_LIEQ01000015.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LIEQ01000015.1All displayed genes belong to this local TCS context.
Neighborhood span4 242-5 848 nt1 607 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 242 nt5 848 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
XC29_RS01355GCF_032081295#XC29_RS01355
HKClassic
4 242-5 159 nt · Reverse (-)
XC29_RS01360GCF_032081295#XC29_RS01360
RROmpRCurrent focus
5 159-5 848 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032081295#XC29_RS01360The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1282843
Simplified PFAM architecture for RROC_1282843
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[153-226]
- Domain count: 2
- Matched identifier: RROC_1282843
- Positioned domains: Response_reg 3-112 ; Trans_reg_C 153-226
Cluster members and taxonomy
Representative gene: GCF_032081295#XC29_RS01360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081295
AssemblyASM3208129v1 · Scaffoldhaploid
Genome composition4 276 346 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key