1 SBP_bac_3#1
56-273 aa · 218 aa · 32.2% of protein
Raw token
SBP_bac_3:56:1.89e-47:273:224:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS19080
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_031202285
ClassHKTypeClassicLength677 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031202285#TEMA_RS19080Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length677 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage391 / 677 aa (57.8%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa677 aa
Domain-by-domain annotation3 items
2 HisKA#2
457-522 aa · 66 aa · 9.7% of protein
Raw token
HisKA:457:0.000000000000245:522:66:643 HATPase_c#3
565-671 aa · 107 aa · 15.8% of protein
Raw token
HATPase_c:565:2.11e-26:671:108:109- Raw architecture: SBP_bac_3:56:1.89e-47:273:224:224#HisKA:457:0.000000000000245:522:66:64#HATPase_c:565:2.11e-26:671:108:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031202285::NZ_CP101637.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3842382-3845774Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_39440RefSeq proteinWP_228106014.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00049Context members
TEMA_RS19080TEMA_RS19085
Partner locus tags
TEMA_RS19080TEMA_RS19085
Partner old locus tags
TEMA_39440TEMA_39450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228106014.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q7D7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q7D7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS19080Primary locus identifier stored in the genes table.
Old locus tagTEMA_39440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval3 842 382-3 844 415 nt2 034 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 842 382-3 845 774 ntGCF_031202285::NZ_CP101637.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span3 842 382-3 845 774 nt3 393 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 842 382 nt3 845 774 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TEMA_RS19080GCF_031202285#TEMA_RS19080
HKClassicCurrent focus
3 842 382-3 844 415 nt · Forward (+)
TEMA_RS19085GCF_031202285#TEMA_RS19085
RRNtrC
3 844 416-3 845 774 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS15680Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0826352
Simplified PFAM architecture for HKOC_0826352
PFAM domain coverage: 390 / 677 aa (57.6%)
1 aa677 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[56-273] | HisKA[459-522] | HATPase_c[566-673]
- Domain count: 3
- Matched identifier: HKOC_0826352
- Positioned domains: SBP_bac_3 56-273 ; HisKA 459-522 ; HATPase_c 566-673
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS15680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key