1 HisKA#1
314-381 aa · 68 aa · 12.1% of protein
Raw token
HisKA:314:0.00000000424:381:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS07705
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_031202285
ClassHKTypeClassicLength563 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_031202285#TEMA_RS07705Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length563 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 563 aa (31.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa563 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
427-536 aa · 110 aa · 19.5% of protein
Raw token
HATPase_c:427:2.41e-29:536:110:109- Raw architecture: HisKA:314:0.00000000424:381:68:64#HATPase_c:427:2.41e-29:536:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_031202285::NZ_CP101637.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1504965-1506656Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_16150RefSeq proteinWP_309165007.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00021Context members
TEMA_RS07705
Partner locus tags
TEMA_RS07705
Partner old locus tags
TEMA_16150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_309165007.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS07705Primary locus identifier stored in the genes table.
Old locus tagTEMA_16150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval1 504 965-1 506 656 nt1 692 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 504 965-1 506 656 ntGCF_031202285::NZ_CP101637.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span1 504 965-1 506 656 nt1 692 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 504 965 nt1 506 656 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TEMA_RS07705GCF_031202285#TEMA_RS07705
HKClassicCurrent focus
1 504 965-1 506 656 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_031202285#TEMA_RS07705The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1247446
Simplified PFAM architecture for HKOC_1247446
PFAM domain coverage: 176 / 563 aa (31.3%)
1 aa563 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[314-379] | HATPase_c[428-537]
- Domain count: 2
- Matched identifier: HKOC_1247446
- Positioned domains: HisKA 314-379 ; HATPase_c 428-537
Cluster members and taxonomy
Representative gene: GCF_031202285#TEMA_RS07705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key