1 HAMP#1
176-245 aa · 70 aa · 14.7% of protein
Raw token
HAMP:176:0.000000000000165:245:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS07275
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_031202285
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031202285#TEMA_RS07275Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 476 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
252-316 aa · 65 aa · 13.7% of protein
Raw token
HisKA:252:2.94e-17:316:65:643 HATPase_c#3
364-469 aa · 106 aa · 22.3% of protein
Raw token
HATPase_c:364:1.95e-30:469:107:109- Raw architecture: HAMP:176:0.000000000000165:245:70:69#HisKA:252:2.94e-17:316:65:64#HATPase_c:364:1.95e-30:469:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031202285::NZ_CP101637.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1416606-1418738Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_15190RefSeq proteinWP_228103367.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00020Context members
TEMA_RS07275TEMA_RS07280
Partner locus tags
TEMA_RS07275TEMA_RS07280
Partner old locus tags
TEMA_15190TEMA_15200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228103367.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PZQ1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PZQ1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS07275Primary locus identifier stored in the genes table.
Old locus tagTEMA_15190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval1 416 606-1 418 036 nt1 431 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 416 606-1 418 738 ntGCF_031202285::NZ_CP101637.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span1 416 606-1 418 738 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 416 606 nt1 418 738 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TEMA_RS07275GCF_031202285#TEMA_RS07275
HKClassicCurrent focus
1 416 606-1 418 036 nt · Reverse (-)
TEMA_RS07280GCF_031202285#TEMA_RS07280
RROmpR
1 418 040-1 418 738 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS01885Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1659653
Simplified PFAM architecture for HKOC_1659653
PFAM domain coverage: 222 / 476 aa (46.6%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-245] | HisKA[252-315] | HATPase_c[364-470]
- Domain count: 3
- Matched identifier: HKOC_1659653
- Positioned domains: HAMP 195-245 ; HisKA 252-315 ; HATPase_c 364-470
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS01885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key