1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:4.87e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PCY24_RS01980
Response regulator OmpR family
Streptococcus sp. SV1 · GCF_030440165
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030440165#PCY24_RS01980Stable P2CS identifier used across views.
GenomeGCF_030440165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 229 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-226 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:151:9.7e-30:226:77:77- Raw architecture: Response_reg:5:4.87e-37:114:111:111#Trans_reg_C:151:9.7e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030440165::NZ_JAQFJP010000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span157661-159876Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPCY24_01980RefSeq proteinWP_002883757.1
Context group ID
GCF_030440165::NZ_JAQFJP010000002.1::G00006Context members
PCY24_RS01980PCY24_RS01985
Partner locus tags
PCY24_RS01980PCY24_RS01985
Partner old locus tags
PCY24_01980PCY24_01985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002883757.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7LSM3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7LSM3_9STREDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPCY24_RS01980Primary locus identifier stored in the genes table.
Old locus tagPCY24_01980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQFJP010000002.1Sequence record reported by the local genomic context database.
Genomic interval157 661-158 350 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span157 661-159 876 ntGCF_030440165::NZ_JAQFJP010000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030440165::NZ_JAQFJP010000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQFJP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span157 661-159 876 nt2 216 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 661 nt159 876 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PCY24_RS01980GCF_030440165#PCY24_RS01980
RROmpRCurrent focus
157 661-158 350 nt · Forward (+)
PCY24_RS01985GCF_030440165#PCY24_RS01985
HKClassic
158 347-159 876 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000174715#STRSA0001_RS01190Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1247090
Simplified PFAM architecture for RROC_1247090
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[152-225]
- Domain count: 2
- Matched identifier: RROC_1247090
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 152-225 ; Trans_reg_C 152-225
Cluster members and taxonomy
Representative gene: GCF_000174715#STRSA0001_RS01190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 018 256 · GCF_030440165
AssemblyASM3044016v1 · Contighaploid
Genome composition2 092 716 bp · 40,0% GCStreptococcus sp. SV1
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key