1 Response_reg#1
7-119 aa · 113 aa · 52.8% of protein
Raw token
Response_reg:7:4.6e-25:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PCY24_RS00130
Response regulator NarL family
Streptococcus sp. SV1 · GCF_030440165
ClassRRTypeNarLLength214 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030440165#PCY24_RS00130Stable P2CS identifier used across views.
GenomeGCF_030440165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 214 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.1% of protein
Raw token
HTH_LUXR:146:5.7e-25:203:58:58- Raw architecture: Response_reg:7:4.6e-25:119:113:111#HTH_LUXR:146:5.7e-25:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030440165::NZ_JAQFJP010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53404-55048Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPCY24_00130RefSeq proteinWP_002889370.1
Context group ID
GCF_030440165::NZ_JAQFJP010000001.1::G00002Context members
PCY24_RS00130PCY24_RS00135
Partner locus tags
PCY24_RS00130PCY24_RS00135
Partner old locus tags
PCY24_00130PCY24_00135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002889370.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPCY24_RS00130Primary locus identifier stored in the genes table.
Old locus tagPCY24_00130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQFJP010000001.1Sequence record reported by the local genomic context database.
Genomic interval53 404-54 048 nt645 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 404-55 048 ntGCF_030440165::NZ_JAQFJP010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030440165::NZ_JAQFJP010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQFJP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span53 404-55 048 nt1 645 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 404 nt55 048 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PCY24_RS00130GCF_030440165#PCY24_RS00130
RRNarLCurrent focus
53 404-54 048 nt · Reverse (-)
PCY24_RS00135GCF_030440165#PCY24_RS00135
HKClassic
54 038-55 048 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448605#HSISS3_RS08100Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1935985
Simplified PFAM architecture for RROC_1935985
PFAM domain coverage: 168 / 214 aa (78.5%)
1 aa214 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-118] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_1935985
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_000448605#HSISS3_RS08100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 018 256 · GCF_030440165
AssemblyASM3044016v1 · Contighaploid
Genome composition2 092 716 bp · 40,0% GCStreptococcus sp. SV1
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key