1 CheW#1
17-149 aa · 133 aa · 44.0% of protein
Raw token
CheW:17:1.92e-39:149:134:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUF98_RS08565
Response regulator CheV family
Bacillus mycoides · GCF_030348665
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030348665#QUF98_RS08565Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 302 aa (84.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 Response_reg#2
176-298 aa · 123 aa · 40.7% of protein
Raw token
Response_reg:176:3.47e-18:298:124:111- Raw architecture: CheW:17:1.92e-39:149:134:138#Response_reg:176:3.47e-18:298:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030348665::NZ_JAUCFB010000001.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1647243-1648151Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUF98_08570RefSeq proteinWP_289403569.1
Context group ID
GCF_030348665::NZ_JAUCFB010000001.1::G00024Context members
QUF98_RS08565
Partner locus tags
QUF98_RS08565
Partner old locus tags
QUF98_08570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_289403569.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUF98_RS08565Primary locus identifier stored in the genes table.
Old locus tagQUF98_08570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFB010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 647 243-1 648 151 nt909 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 647 243-1 648 151 ntGCF_030348665::NZ_JAUCFB010000001.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348665::NZ_JAUCFB010000001.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 647 243-1 648 151 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 647 243 nt1 648 151 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QUF98_RS08565GCF_030348665#QUF98_RS08565
RRCheVCurrent focus
1 647 243-1 648 151 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030348665#QUF98_RS08565The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0569643
Simplified PFAM architecture for RROC_0569643
PFAM domain coverage: 252 / 302 aa (83.4%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[18-149] | Response_reg[176-295]
- Domain count: 2
- Matched identifier: RROC_0569643
- Positioned domains: CheW 18-149 ; Response_reg 176-295
Cluster members and taxonomy
Representative gene: GCF_030348665#QUF98_RS08565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030348665
AssemblyASM3034866v1 · Contighaploid
Genome composition5 953 358 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 70 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key