1 HAMP#1
200-263 aa · 64 aa · 12.8% of protein
Raw token
HAMP:200:0.0000000000637:263:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUF98_RS01535
Histidine kinase, Classic
Bacillus mycoides · GCF_030348665
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030348665#QUF98_RS01535Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 501 aa (47.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
276-343 aa · 68 aa · 13.6% of protein
Raw token
HisKA:276:0.00000000000000116:343:68:643 HATPase_c#3
390-497 aa · 108 aa · 21.6% of protein
Raw token
HATPase_c:390:8.64e-23:497:109:109- Raw architecture: HAMP:200:0.0000000000637:263:64:69#HisKA:276:0.00000000000000116:343:68:64#HATPase_c:390:8.64e-23:497:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030348665::NZ_JAUCFB010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span264344-266534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUF98_01535RefSeq proteinWP_289402903.1
Context group ID
GCF_030348665::NZ_JAUCFB010000001.1::G00002Context members
QUF98_RS01530QUF98_RS01535
Partner locus tags
QUF98_RS01530QUF98_RS01535
Partner old locus tags
QUF98_01530QUF98_01535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_289402903.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUF98_RS01535Primary locus identifier stored in the genes table.
Old locus tagQUF98_01535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFB010000001.1Sequence record reported by the local genomic context database.
Genomic interval265 029-266 534 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span264 344-266 534 ntGCF_030348665::NZ_JAUCFB010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348665::NZ_JAUCFB010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span264 344-266 534 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
264 344 nt266 534 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUF98_RS01530GCF_030348665#QUF98_RS01530
RROmpR
264 344-265 045 nt · Forward (+)
QUF98_RS01535GCF_030348665#QUF98_RS01535
HKClassicCurrent focus
265 029-266 534 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030348665#QUF98_RS01535The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1472282
Simplified PFAM architecture for HKOC_1472282
PFAM domain coverage: 219 / 501 aa (43.7%)
1 aa501 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[220-263] | HisKA[276-342] | HATPase_c[390-497]
- Domain count: 3
- Matched identifier: HKOC_1472282
- Positioned domains: HAMP 220-263 ; HisKA 276-342 ; HATPase_c 390-497
Cluster members and taxonomy
Representative gene: GCF_030348665#QUF98_RS01535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030348665
AssemblyASM3034866v1 · Contighaploid
Genome composition5 953 358 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 70 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key