1 Response_reg#1
4-116 aa · 113 aa · 53.1% of protein
Raw token
Response_reg:4:1.45e-34:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUF98_RS03260
Response regulator NarL family
Bacillus mycoides · GCF_030348665
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030348665#QUF98_RS03260Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 213 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-204 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:150:7.14e-25:204:55:58- Raw architecture: Response_reg:4:1.45e-34:116:113:111#HTH_LUXR:150:7.14e-25:204:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030348665::NZ_JAUCFB010000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span650479-652954Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUF98_03260RefSeq proteinWP_044444480.1
Context group ID
GCF_030348665::NZ_JAUCFB010000001.1::G00009Context members
QUF98_RS03255QUF98_RS03260
Partner locus tags
QUF98_RS03255QUF98_RS03260
Partner old locus tags
QUF98_03255QUF98_03260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044444480.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUF98_RS03260Primary locus identifier stored in the genes table.
Old locus tagQUF98_03260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFB010000001.1Sequence record reported by the local genomic context database.
Genomic interval652 313-652 954 nt642 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span650 479-652 954 ntGCF_030348665::NZ_JAUCFB010000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348665::NZ_JAUCFB010000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span650 479-652 954 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
650 479 nt652 954 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUF98_RS03255GCF_030348665#QUF98_RS03255
HKClassic
650 479-652 311 nt · Forward (+)
QUF98_RS03260GCF_030348665#QUF98_RS03260
RRNarLCurrent focus
652 313-652 954 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000931375#SZ39_RS27275Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1964524
Simplified PFAM architecture for RROC_1964524
PFAM domain coverage: 169 / 213 aa (79.3%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_1964524
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_000931375#SZ39_RS27275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030348665
AssemblyASM3034866v1 · Contighaploid
Genome composition5 953 358 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 70 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key