1 Response_reg#1
6-116 aa · 111 aa · 52.6% of protein
Raw token
Response_reg:6:5.81e-35:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUF93_RS13010
Response regulator NarL family
Bacillus hominis · GCF_030348325
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030348325#QUF93_RS13010Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 211 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
148-205 aa · 58 aa · 27.5% of protein
Raw token
HTH_LUXR:148:2.44e-24:205:58:58- Raw architecture: Response_reg:6:5.81e-35:116:111:111#HTH_LUXR:148:2.44e-24:205:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030348325::NZ_JAUCFS010000005.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2055689-2057457Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUF93_13025RefSeq proteinWP_289359044.1
Context group ID
GCF_030348325::NZ_JAUCFS010000005.1::G00023Context members
QUF93_RS13005QUF93_RS13010
Partner locus tags
QUF93_RS13005QUF93_RS13010
Partner old locus tags
QUF93_13020QUF93_13025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_289359044.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7R6Q9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7R6Q9_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUF93_RS13010Primary locus identifier stored in the genes table.
Old locus tagQUF93_13025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFS010000005.1Sequence record reported by the local genomic context database.
Genomic interval2 056 822-2 057 457 nt636 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 055 689-2 057 457 ntGCF_030348325::NZ_JAUCFS010000005.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348325::NZ_JAUCFS010000005.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFS010000005.1All displayed genes belong to this local TCS context.
Neighborhood span2 055 689-2 057 457 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 055 689 nt2 057 457 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUF93_RS13005GCF_030348325#QUF93_RS13005
HKClassic
2 055 689-2 056 807 nt · Forward (+)
QUF93_RS13010GCF_030348325#QUF93_RS13010
RRNarLCurrent focus
2 056 822-2 057 457 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030348325#QUF93_RS13010The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2013187
Simplified PFAM architecture for RROC_2013187
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_2013187
- Positioned domains: Response_reg 6-116 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_030348325#QUF93_RS13010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 817 478 · GCF_030348325
AssemblyASM3034832v1 · Contigreference genome · haploid
Genome composition5 526 302 bp · 35,5% GCBacillus hominis
Signal transduction countsGenes 103 · HK 57 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key