1 Response_reg#1
5-115 aa · 111 aa · 35.8% of protein
Raw token
Response_reg:5:8.88e-20:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUF93_RS10930
Response regulator, unclassified
Bacillus hominis · GCF_030348325
ClassRRTypeunclassifiedLength310 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030348325#QUF93_RS10930Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length310 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage252 / 310 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa310 aa
Domain-by-domain annotation2 items
2 YcbB#2
159-299 aa · 141 aa · 45.5% of protein
Raw token
YcbB:159:3.06e-60:299:141:131- Raw architecture: Response_reg:5:8.88e-20:115:113:111#YcbB:159:3.06e-60:299:141:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030348325::NZ_JAUCFS010000005.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1657510-1658442Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUF93_10945RefSeq proteinWP_289358781.1
Context group ID
GCF_030348325::NZ_JAUCFS010000005.1::G00021Context members
QUF93_RS10930
Partner locus tags
QUF93_RS10930
Partner old locus tags
QUF93_10945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_289358781.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7R5P6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7R5P6_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUF93_RS10930Primary locus identifier stored in the genes table.
Old locus tagQUF93_10945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFS010000005.1Sequence record reported by the local genomic context database.
Genomic interval1 657 510-1 658 442 nt933 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 657 510-1 658 442 ntGCF_030348325::NZ_JAUCFS010000005.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348325::NZ_JAUCFS010000005.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFS010000005.1All displayed genes belong to this local TCS context.
Neighborhood span1 657 510-1 658 442 nt933 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 657 510 nt1 658 442 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QUF93_RS10930GCF_030348325#QUF93_RS10930
RRunclassifiedCurrent focus
1 657 510-1 658 442 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030348325#QUF93_RS10930The current gene is the representative for this cluster.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0554233
Simplified PFAM architecture for RROC_0554233
PFAM domain coverage: 249 / 310 aa (80.3%)
1 aa310 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[5-113] | YcbB[160-299]
- Domain count: 2
- Matched identifier: RROC_0554233
- Positioned domains: Response_reg 5-113 ; YcbB 160-299
Cluster members and taxonomy
Representative gene: GCF_030348325#QUF93_RS10930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 817 478 · GCF_030348325
AssemblyASM3034832v1 · Contigreference genome · haploid
Genome composition5 526 302 bp · 35,5% GCBacillus hominis
Signal transduction countsGenes 103 · HK 57 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key