1 Response_reg#1
5-116 aa · 112 aa · 91.8% of protein
Raw token
Response_reg:5:6.42e-30:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRE62_RS12335
Response regulator, CheY family
Bacillus mycoides · GCF_030292225
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030292225#QRE62_RS12335Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 122 aa (91.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa122 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:6.42e-30:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030292225::NZ_CP128149.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1673780-1676265Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQRE62_12325RefSeq proteinWP_113708944.1
Context group ID
GCF_030292225::NZ_CP128149.1::G00022Context members
QRE62_RS12335QRE62_RS12340
Partner locus tags
QRE62_RS12335QRE62_RS12340
Partner old locus tags
QRE62_12325QRE62_12330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_113708944.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRE62_RS12335Primary locus identifier stored in the genes table.
Old locus tagQRE62_12325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP128149.1Sequence record reported by the local genomic context database.
Genomic interval1 673 780-1 674 148 nt369 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 673 780-1 676 265 ntGCF_030292225::NZ_CP128149.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030292225::NZ_CP128149.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP128149.1All displayed genes belong to this local TCS context.
Neighborhood span1 673 780-1 676 265 nt2 486 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 673 780 nt1 676 265 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QRE62_RS12335GCF_030292225#QRE62_RS12335
RRCheYCurrent focus
1 673 780-1 674 148 nt · Forward (+)
QRE62_RS12340GCF_030292225#QRE62_RS12340
HKCheA
1 674 277-1 676 265 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003264205#B5P40_RS05105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2406246
Simplified PFAM architecture for RROC_2406246
PFAM domain coverage: 112 / 122 aa (91.8%)
1 aa122 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-116]
- Domain count: 1
- Matched identifier: RROC_2406246
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116
Cluster members and taxonomy
Representative gene: GCF_003264205#B5P40_RS05105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030292225
AssemblyASM3029222v1 · Complete Genomehaploid
Genome composition6 138 997 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key