1 Response_reg#1
14-123 aa · 110 aa · 44.9% of protein
Raw token
Response_reg:14:3.32e-36:123:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRY07_RS02335
Response regulator OmpR family
Bacillus cereus · GCF_030291955
ClassRRTypeOmpRLength245 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030291955#QRY07_RS02335Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 245 aa (76.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
162-238 aa · 77 aa · 31.4% of protein
Raw token
Trans_reg_C:162:1.87e-34:238:77:77- Raw architecture: Response_reg:14:3.32e-36:123:111:111#Trans_reg_C:162:1.87e-34:238:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030291955::NZ_CP128107.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span298207-299947Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQRY07_02335RefSeq proteinWP_286119521.1
Context group ID
GCF_030291955::NZ_CP128107.1::G00003Context members
QRY07_RS02330QRY07_RS02335
Partner locus tags
QRY07_RS02330QRY07_RS02335
Partner old locus tags
QRY07_02330QRY07_02335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_286119521.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRY07_RS02335Primary locus identifier stored in the genes table.
Old locus tagQRY07_02335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP128107.1Sequence record reported by the local genomic context database.
Genomic interval299 210-299 947 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span298 207-299 947 ntGCF_030291955::NZ_CP128107.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030291955::NZ_CP128107.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP128107.1All displayed genes belong to this local TCS context.
Neighborhood span298 207-299 947 nt1 741 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
298 207 nt299 947 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QRY07_RS02330GCF_030291955#QRY07_RS02330
HKClassic
298 207-299 220 nt · Reverse (-)
QRY07_RS02335GCF_030291955#QRY07_RS02335
RROmpRCurrent focus
299 210-299 947 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030291955#QRY07_RS02335The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0799446
Simplified PFAM architecture for RROC_0799446
PFAM domain coverage: 187 / 245 aa (76.3%)
1 aa245 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[14-123] | Trans_reg_C[162-238]
- Domain count: 2
- Matched identifier: RROC_0799446
- Positioned domains: Response_reg 14-123 ; Trans_reg_C 162-238
Cluster members and taxonomy
Representative gene: GCF_030291955#QRY07_RS02335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_030291955
AssemblyASM3029195v1 · Complete Genomehaploid
Genome composition5 332 520 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 117 · HK 64 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key