1 Response_reg#1
4-112 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:4:0.00000000000000574:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSJ43_RS15080
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_030268445
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030268445#QSJ43_RS15080Stable P2CS identifier used across views.
GenomeGCF_030268445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 236 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-229 aa · 93 aa · 39.4% of protein
Raw token
LytTR:137:2.82e-17:229:98:98- Raw architecture: Response_reg:4:0.00000000000000574:112:112:111#LytTR:137:2.82e-17:229:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030268445::NZ_BSQR01000043.1::G00041
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span20404-21114Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRgna01_29620RefSeq proteinWP_225084410.1
Context group ID
GCF_030268445::NZ_BSQR01000043.1::G00041Context members
QSJ43_RS15080
Partner locus tags
QSJ43_RS15080
Partner old locus tags
Rgna01_29620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_225084410.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSJ43_RS15080Primary locus identifier stored in the genes table.
Old locus tagRgna01_29620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSQR01000043.1Sequence record reported by the local genomic context database.
Genomic interval20 404-21 114 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 404-21 114 ntGCF_030268445::NZ_BSQR01000043.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030268445::NZ_BSQR01000043.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSQR01000043.1All displayed genes belong to this local TCS context.
Neighborhood span20 404-21 114 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 404 nt21 114 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QSJ43_RS15080GCF_030268445#QSJ43_RS15080
RRLytTRCurrent focus
20 404-21 114 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020181455#LCQ72_RS04415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1002622
Simplified PFAM architecture for RROC_1002622
PFAM domain coverage: 200 / 236 aa (84.7%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[139-229]
- Domain count: 2
- Matched identifier: RROC_1002622
- Positioned domains: Response_reg 4-112 ; LytTR 139-229
Cluster members and taxonomy
Representative gene: GCF_020181455#LCQ72_RS04415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_030268445
AssemblyASM3026844v1 · Scaffoldhaploid
Genome composition3 609 867 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key