1 Response_reg#1
4-96 aa · 93 aa · 41.5% of protein
Raw token
Response_reg:4:0.000000000000169:96:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSJ43_RS13485
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_030268445
ClassRRTypeunclassifiedLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030268445#QSJ43_RS13485Stable P2CS identifier used across views.
GenomeGCF_030268445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage93 / 224 aa (41.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.000000000000169:96:93:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030268445::NZ_BSQR01000033.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span37212-37886Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRgna01_26640RefSeq proteinWP_225084400.1
Context group ID
GCF_030268445::NZ_BSQR01000033.1::G00038Context members
QSJ43_RS13485
Partner locus tags
QSJ43_RS13485
Partner old locus tags
Rgna01_26640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_225084400.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1AKY1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1AKY1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSJ43_RS13485Primary locus identifier stored in the genes table.
Old locus tagRgna01_26640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSQR01000033.1Sequence record reported by the local genomic context database.
Genomic interval37 212-37 886 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 212-37 886 ntGCF_030268445::NZ_BSQR01000033.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030268445::NZ_BSQR01000033.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSQR01000033.1All displayed genes belong to this local TCS context.
Neighborhood span37 212-37 886 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 212 nt37 886 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QSJ43_RS13485GCF_030268445#QSJ43_RS13485
RRunclassifiedCurrent focus
37 212-37 886 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019413745#QDI32_RS02150Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1556951
Simplified PFAM architecture for RROC_1556951
PFAM domain coverage: 99 / 224 aa (44.2%)
1 aa224 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-102]
- Domain count: 1
- Matched identifier: RROC_1556951
- Positioned domains: Response_reg 4-102
Cluster members and taxonomy
Representative gene: GCF_019413745#QDI32_RS02150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_030268445
AssemblyASM3026844v1 · Scaffoldhaploid
Genome composition3 609 867 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key