1 HAMP#1
144-213 aa · 70 aa · 15.3% of protein
Raw token
HAMP:144:0.0000000000209:213:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSJ43_RS03610
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_030268445
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030268445#QSJ43_RS03610Stable P2CS identifier used across views.
GenomeGCF_030268445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 457 aa (52.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-302 aa · 65 aa · 14.2% of protein
Raw token
HisKA:238:0.000000000101:302:65:643 HATPase_c#3
348-451 aa · 104 aa · 22.8% of protein
Raw token
HATPase_c:348:3.34e-18:451:109:109- Raw architecture: HAMP:144:0.0000000000209:213:70:69#HisKA:238:0.000000000101:302:65:64#HATPase_c:348:3.34e-18:451:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030268445::NZ_BSQR01000004.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5765-7793Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRgna01_07210RefSeq proteinWP_225084209.1
Context group ID
GCF_030268445::NZ_BSQR01000004.1::G00011Context members
QSJ43_RS03610QSJ43_RS03615
Partner locus tags
QSJ43_RS03610QSJ43_RS03615
Partner old locus tags
Rgna01_07210Rgna01_07220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_225084209.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSJ43_RS03610Primary locus identifier stored in the genes table.
Old locus tagRgna01_07210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSQR01000004.1Sequence record reported by the local genomic context database.
Genomic interval5 765-7 138 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 765-7 793 ntGCF_030268445::NZ_BSQR01000004.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030268445::NZ_BSQR01000004.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSQR01000004.1All displayed genes belong to this local TCS context.
Neighborhood span5 765-7 793 nt2 029 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 765 nt7 793 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QSJ43_RS03610GCF_030268445#QSJ43_RS03610
HKClassicCurrent focus
5 765-7 138 nt · Reverse (-)
QSJ43_RS03615GCF_030268445#QSJ43_RS03615
RROmpR
7 122-7 793 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020181455#LCQ72_RS16620Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1880828
Simplified PFAM architecture for HKOC_1880828
PFAM domain coverage: 216 / 457 aa (47.3%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[163-212] | HisKA[239-302] | HATPase_c[349-450]
- Domain count: 3
- Matched identifier: HKOC_1880828
- Positioned domains: HAMP 163-212 ; HisKA 239-302 ; HATPase_c 349-450
Cluster members and taxonomy
Representative gene: GCF_020181455#LCQ72_RS16620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_030268445
AssemblyASM3026844v1 · Scaffoldhaploid
Genome composition3 609 867 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key