1 Response_reg#1
4-116 aa · 113 aa · 86.3% of protein
Raw token
Response_reg:4:6.48e-16:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO81_RS14910
Response regulator, CheY family
Clostridioides difficile · GCF_030251585
ClassRRTypeCheYLength131 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251585#QQO81_RS14910Stable P2CS identifier used across views.
GenomeGCF_030251585Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length131 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 131 aa (86.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa131 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:6.48e-16:116:116:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251585::NZ_JASSXV010000370.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span167-562Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO81_14860RefSeq proteinWP_135350578.1
Context group ID
GCF_030251585::NZ_JASSXV010000370.1::G00042Context members
QQO81_RS14910
Partner locus tags
QQO81_RS14910
Partner old locus tags
QQO81_14860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_135350578.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO81_RS14910Primary locus identifier stored in the genes table.
Old locus tagQQO81_14860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXV010000370.1Sequence record reported by the local genomic context database.
Genomic interval167-562 nt396 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span167-562 ntGCF_030251585::NZ_JASSXV010000370.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251585::NZ_JASSXV010000370.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXV010000370.1All displayed genes belong to this local TCS context.
Neighborhood span167-562 nt396 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
167 nt562 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQO81_RS14910GCF_030251585#QQO81_RS14910
RRCheYCurrent focus
167-562 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004684465#E5F43_RS14965Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2316690
Simplified PFAM architecture for RROC_2316690
PFAM domain coverage: 113 / 131 aa (86.3%)
1 aa131 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-116]
- Domain count: 1
- Matched identifier: RROC_2316690
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116
Cluster members and taxonomy
Representative gene: GCF_004684465#E5F43_RS14965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251585
AssemblyASM3025158v1 · Contighaploid
Genome composition4 109 288 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key