1 HisKA#1
284-350 aa · 67 aa · 13.3% of protein
Raw token
HisKA:284:0.0000000000000113:350:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO81_RS00285
Histidine kinase, Classic
Clostridioides difficile · GCF_030251585
ClassHKTypeClassicLength505 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251585#QQO81_RS00285Stable P2CS identifier used across views.
GenomeGCF_030251585Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 505 aa (30.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
403-488 aa · 86 aa · 17.0% of protein
Raw token
HATPase_c:403:0.0000000436:488:90:109- Raw architecture: HisKA:284:0.0000000000000113:350:67:64#HATPase_c:403:0.0000000436:488:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251585::NZ_JASSXV010000004.1::G00056
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9677-11196Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO81_00285RefSeq proteinWP_284929920.1
Context group ID
GCF_030251585::NZ_JASSXV010000004.1::G00056Context members
QQO81_RS00285
Partner locus tags
QQO81_RS00285
Partner old locus tags
QQO81_00285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284929920.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO81_RS00285Primary locus identifier stored in the genes table.
Old locus tagQQO81_00285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXV010000004.1Sequence record reported by the local genomic context database.
Genomic interval9 677-11 196 nt1 520 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 677-11 196 ntGCF_030251585::NZ_JASSXV010000004.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251585::NZ_JASSXV010000004.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXV010000004.1All displayed genes belong to this local TCS context.
Neighborhood span9 677-11 196 nt1 520 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 677 nt11 196 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQO81_RS00285GCF_030251585#QQO81_RS00285
HKClassicCurrent focus
9 677-11 196 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451745#QSK_RS11670Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1359835
Simplified PFAM architecture for HKOC_1359835
PFAM domain coverage: 191 / 529 aa (36.1%)
1 aa529 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[254-294] | HisKA[309-374] | HATPase_c[426-509]
- Domain count: 3
- Matched identifier: HKOC_1359835
- Positioned domains: HAMP 254-294 ; HisKA 309-374 ; HATPase_c 426-509
Cluster members and taxonomy
Representative gene: GCF_000451745#QSK_RS11670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251585
AssemblyASM3025158v1 · Contighaploid
Genome composition4 109 288 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key