1 Response_reg#1
3-114 aa · 112 aa · 35.8% of protein
Raw token
Response_reg:3:3.42e-26:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO58_RS00300
Response regulator, unclassified
Clostridioides difficile · GCF_030251305
ClassRRTypeunclassifiedLength313 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251305#QQO58_RS00300Stable P2CS identifier used across views.
GenomeGCF_030251305Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage231 / 313 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 AAA_5#2
157-275 aa · 119 aa · 38.0% of protein
Raw token
AAA_5:157:0.00000000192:275:128:135- Raw architecture: Response_reg:3:3.42e-26:114:112:111#AAA_5:157:0.00000000192:275:128:135
- Domain description: 1 Response_reg,1 AAA_5
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251305::NZ_JASSXG010000008.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span468-2132Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO58_00300RefSeq proteinWP_284965894.1
Context group ID
GCF_030251305::NZ_JASSXG010000008.1::G00057Context members
QQO58_RS00300QQO58_RS00305
Partner locus tags
QQO58_RS00300QQO58_RS00305
Partner old locus tags
QQO58_00300QQO58_00305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284965894.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO58_RS00300Primary locus identifier stored in the genes table.
Old locus tagQQO58_00300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXG010000008.1Sequence record reported by the local genomic context database.
Genomic interval468-1 409 nt942 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span468-2 132 ntGCF_030251305::NZ_JASSXG010000008.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251305::NZ_JASSXG010000008.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXG010000008.1All displayed genes belong to this local TCS context.
Neighborhood span468-2 132 nt1 665 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
468 nt2 132 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO58_RS00300GCF_030251305#QQO58_RS00300
RRunclassifiedCurrent focus
468-1 409 nt · Reverse (-)
QQO58_RS00305GCF_030251305#QQO58_RS00305
HKClassic
1 409-2 132 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251305#QQO58_RS00300The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0546186
Simplified PFAM architecture for RROC_0546186
PFAM domain coverage: 275 / 313 aa (87.9%)
1 aa313 aa
Response_regSigma54_activat
- Simplified architecture: Response_reg + Sigma54_activat
- Raw architecture: Response_reg[3-113] | Sigma54_activat[137-300]
- Domain count: 2
- Matched identifier: RROC_0546186
- Positioned domains: Response_reg 3-113 ; Sigma54_activat 137-300
Cluster members and taxonomy
Representative gene: GCF_030251305#QQO58_RS00300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251305
AssemblyASM3025130v1 · Contighaploid
Genome composition3 956 422 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key