1 Response_reg#1
15-114 aa · 100 aa · 49.8% of protein
Raw token
Response_reg:15:2.91e-31:114:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO88_RS01710
Response regulator, AmiR_NasR family
Clostridioides difficile · GCF_030251125
ClassRRTypeAmiR_NasRLength201 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251125#QQO88_RS01710Stable P2CS identifier used across views.
GenomeGCF_030251125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length201 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 201 aa (74.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa201 aa
Domain-by-domain annotation2 items
2 ANTAR#2
148-196 aa · 49 aa · 24.4% of protein
Raw token
ANTAR:148:4.21e-20:196:49:49- Raw architecture: Response_reg:15:2.91e-31:114:100:111#ANTAR:148:4.21e-20:196:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251125::NZ_JASSXD010000043.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2010Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO88_01710RefSeq proteinWP_331492824.1
Context group ID
GCF_030251125::NZ_JASSXD010000043.1::G00049Context members
QQO88_RS01710QQO88_RS01715
Partner locus tags
QQO88_RS01710QQO88_RS01715
Partner old locus tags
QQO88_01710QQO88_01715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_331492824.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO88_RS01710Primary locus identifier stored in the genes table.
Old locus tagQQO88_01710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXD010000043.1Sequence record reported by the local genomic context database.
Genomic interval1-608 nt608 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 010 ntGCF_030251125::NZ_JASSXD010000043.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251125::NZ_JASSXD010000043.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXD010000043.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 010 nt2 010 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 010 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO88_RS01710GCF_030251125#QQO88_RS01710
RRAmiR_NasRCurrent focus
1-608 nt · Forward (+)
QQO88_RS01715GCF_030251125#QQO88_RS01715
HKClassic
601-2 010 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251125#QQO88_RS01710The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2128965
Simplified PFAM architecture for RROC_2128965
PFAM domain coverage: 164 / 201 aa (81.6%)
1 aa201 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[15-125] | ANTAR[144-196]
- Domain count: 2
- Matched identifier: RROC_2128965
- Positioned domains: Response_reg 15-125 ; ANTAR 144-196
Cluster members and taxonomy
Representative gene: GCF_030251125#QQO88_RS01710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251125
AssemblyASM3025112v1 · Contighaploid
Genome composition3 985 503 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key