1 Response_reg#1
10-109 aa · 100 aa · 51.0% of protein
Raw token
Response_reg:10:2.08e-31:109:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO51_RS11900
Response regulator, AmiR_NasR family
Clostridioides difficile · GCF_030250965
ClassRRTypeAmiR_NasRLength196 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030250965#QQO51_RS11900Stable P2CS identifier used across views.
GenomeGCF_030250965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length196 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 196 aa (76.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa196 aa
Domain-by-domain annotation2 items
2 ANTAR#2
143-191 aa · 49 aa · 25.0% of protein
Raw token
ANTAR:143:4.35e-20:191:49:49- Raw architecture: Response_reg:10:2.08e-31:109:100:111#ANTAR:143:4.35e-20:191:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030250965::NZ_JASSXF010000329.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1994Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO51_11915RefSeq proteinWP_331492502.1
Context group ID
GCF_030250965::NZ_JASSXF010000329.1::G00027Context members
QQO51_RS11900QQO51_RS11905
Partner locus tags
QQO51_RS11900QQO51_RS11905
Partner old locus tags
QQO51_11915QQO51_11920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_331492502.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO51_RS11900Primary locus identifier stored in the genes table.
Old locus tagQQO51_11915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXF010000329.1Sequence record reported by the local genomic context database.
Genomic interval1-592 nt592 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 994 ntGCF_030250965::NZ_JASSXF010000329.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030250965::NZ_JASSXF010000329.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXF010000329.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 994 nt1 994 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 994 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO51_RS11900GCF_030250965#QQO51_RS11900
RRAmiR_NasRCurrent focus
1-592 nt · Forward (+)
QQO51_RS11905GCF_030250965#QQO51_RS11905
HKClassic
585-1 994 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030250965#QQO51_RS11900The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2157005
Simplified PFAM architecture for RROC_2157005
PFAM domain coverage: 164 / 196 aa (83.7%)
1 aa196 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[10-120] | ANTAR[139-191]
- Domain count: 2
- Matched identifier: RROC_2157005
- Positioned domains: Response_reg 10-120 ; ANTAR 139-191
Cluster members and taxonomy
Representative gene: GCF_030250965#QQO51_RS11900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030250965
AssemblyASM3025096v1 · Contighaploid
Genome composition4 070 280 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 46 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key