1 Response_reg#1
48-161 aa · 114 aa · 45.1% of protein
Raw token
Response_reg:48:6.11e-16:161:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K1T30_RS00205
Response regulator NarL family
Bifidobacterium catenulatum · GCF_030250365
ClassRRTypeNarLLength253 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030250365#K1T30_RS00205Stable P2CS identifier used across views.
GenomeGCF_030250365Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 253 aa (67.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
190-246 aa · 57 aa · 22.5% of protein
Raw token
HTH_LUXR:190:6.71e-19:246:57:58- Raw architecture: Response_reg:48:6.11e-16:161:115:111#HTH_LUXR:190:6.71e-19:246:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030250365::NZ_CP128186.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span52448-53209Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK1T30_000205RefSeq proteinWP_301436305.1
Context group ID
GCF_030250365::NZ_CP128186.1::G00001Context members
K1T30_RS00205
Partner locus tags
K1T30_RS00205
Partner old locus tags
K1T30_000205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_301436305.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK1T30_RS00205Primary locus identifier stored in the genes table.
Old locus tagK1T30_000205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP128186.1Sequence record reported by the local genomic context database.
Genomic interval52 448-53 209 nt762 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 448-53 209 ntGCF_030250365::NZ_CP128186.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030250365::NZ_CP128186.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP128186.1All displayed genes belong to this local TCS context.
Neighborhood span52 448-53 209 nt762 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 448 nt53 209 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K1T30_RS00205GCF_030250365#K1T30_RS00205
RRNarLCurrent focus
52 448-53 209 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742425#CE168_RS06460Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0681418
Simplified PFAM architecture for RROC_0681418
PFAM domain coverage: 167 / 255 aa (65.5%)
1 aa255 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[50-162] | GerE[194-247]
- Domain count: 2
- Matched identifier: RROC_0681418
- Positioned domains: Response_reg 50-162 ; Response_reg 50-162 ; GerE 194-247 ; GerE 194-247
Cluster members and taxonomy
Representative gene: GCF_002742425#CE168_RS06460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_030250365
AssemblyASM3025036v2 · Complete Genomehaploid
Genome composition2 051 605 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 20 · HK 9 · RR 10CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key