1 Response_reg#1
9-121 aa · 113 aa · 52.1% of protein
Raw token
Response_reg:9:2.61e-35:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQK79_RS23720
Response regulator, unclassified
Escherichia coli · GCF_030163035
ClassRRTypeunclassifiedLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030163035#QQK79_RS23720Stable P2CS identifier used across views.
GenomeGCF_030163035Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 217 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 GerE#2
152-208 aa · 57 aa · 26.3% of protein
Raw token
GerE:152:3.81e-25:208:57:57- Raw architecture: Response_reg:9:2.61e-35:121:113:111#GerE:152:3.81e-25:208:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030163035::NZ_JASEKK010000049.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22403-23056Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_030163035::NZ_JASEKK010000049.1::G00035Context members
QQK79_RS23720
Partner locus tags
QQK79_RS23720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284335183.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQK79_RS23720Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JASEKK010000049.1Sequence record reported by the local genomic context database.
Genomic interval22 403-23 056 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 403-23 056 ntGCF_030163035::NZ_JASEKK010000049.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030163035::NZ_JASEKK010000049.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASEKK010000049.1All displayed genes belong to this local TCS context.
Neighborhood span22 403-23 056 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 403 nt23 056 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQK79_RS23720GCF_030163035#QQK79_RS23720
RRunclassifiedCurrent focus
22 403-23 056 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030163035#QQK79_RS23720The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1864795
Simplified PFAM architecture for RROC_1864795
PFAM domain coverage: 169 / 217 aa (77.9%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-121] | GerE[152-207]
- Domain count: 2
- Matched identifier: RROC_1864795
- Positioned domains: Response_reg 9-121 ; GerE 152-207
Cluster members and taxonomy
Representative gene: GCF_030163035#QQK79_RS23720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_030163035
AssemblyASM3016303v1 · Scaffoldhaploid
Genome composition5 106 250 bp · 50,5% GCEscherichia coli
Signal transduction countsGenes 59 · HK 29 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key