1 HisKA#1
190-255 aa · 66 aa · 14.5% of protein
Raw token
HisKA:190:0.00000000000526:255:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OB928_RS01620
Histidine kinase, Classic
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_029911385
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029911385#OB928_RS01620Stable P2CS identifier used across views.
GenomeGCF_029911385Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 454 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
318-427 aa · 110 aa · 24.2% of protein
Raw token
HATPase_c:318:3.08e-29:427:110:109- Raw architecture: HisKA:190:0.00000000000526:255:66:64#HATPase_c:318:3.08e-29:427:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029911385::NZ_JAOPMG010000002.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span208137-210288Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOB928_01620RefSeq proteinWP_281087270.1
Context group ID
GCF_029911385::NZ_JAOPMG010000002.1::G00002Context members
OB928_RS01620OB928_RS01625
Partner locus tags
OB928_RS01620OB928_RS01625
Partner old locus tags
OB928_01620OB928_01625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_281087270.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOB928_RS01620Primary locus identifier stored in the genes table.
Old locus tagOB928_01620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPMG010000002.1Sequence record reported by the local genomic context database.
Genomic interval208 137-209 501 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span208 137-210 288 ntGCF_029911385::NZ_JAOPMG010000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029911385::NZ_JAOPMG010000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPMG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span208 137-210 288 nt2 152 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 137 nt210 288 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OB928_RS01620GCF_029911385#OB928_RS01620
HKClassicCurrent focus
208 137-209 501 nt · Forward (+)
OB928_RS01625GCF_029911385#OB928_RS01625
RROmpR
209 584-210 288 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029911385#OB928_RS01620The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1920007
Simplified PFAM architecture for HKOC_1920007
PFAM domain coverage: 177 / 454 aa (39.0%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[190-255] | HATPase_c[319-429]
- Domain count: 2
- Matched identifier: HKOC_1920007
- Positioned domains: HisKA 190-255 ; HATPase_c 319-429
Cluster members and taxonomy
Representative gene: GCF_029911385#OB928_RS01620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_029911385
AssemblyASM2991138v1 · Contighaploid
Genome composition2 296 597 bp · 56,0% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 20 · HK 9 · RR 10CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key