1 HisKA#1
45-110 aa · 66 aa · 24.9% of protein
Raw token
HisKA:45:0.000000221:110:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MJ646_RS02655
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_029541965
ClassHKTypeClassicLength265 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029541965#MJ646_RS02655Stable P2CS identifier used across views.
GenomeGCF_029541965Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
External referencesMIST4 MJ646_RS02655MIST4
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length265 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 265 aa (63.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa265 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
163-263 aa · 101 aa · 38.1% of protein
Raw token
HATPase_c:163:5.21e-29:263:101:109- Raw architecture: HisKA:45:0.000000221:110:66:64#HATPase_c:163:5.21e-29:263:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029541965::NZ_CP092470.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span637401-639076Genomic interval covered by the local TCS group.
Context group ID
GCF_029541965::NZ_CP092470.1::G00005Context members
MJ646_RS02650MJ646_RS02655
Partner locus tags
MJ646_RS02650MJ646_RS02655
Partner old locus tags
MJ646_02645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMJ646_RS02655Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP092470.1Sequence record reported by the local genomic context database.
Genomic interval638 045-639 076 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span637 401-639 076 ntGCF_029541965::NZ_CP092470.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029541965::NZ_CP092470.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP092470.1All displayed genes belong to this local TCS context.
Neighborhood span637 401-639 076 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
637 401 nt639 076 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MJ646_RS02650GCF_029541965#MJ646_RS02650
RROmpR
637 401-638 048 nt · Forward (+)
MJ646_RS02655GCF_029541965#MJ646_RS02655
HKClassicCurrent focus
638 045-639 076 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029541965#MJ646_RS02655The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2910555
Simplified PFAM architecture for HKOC_2910555
PFAM domain coverage: 172 / 265 aa (64.9%)
1 aa265 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[46-109] | HATPase_c[157-264]
- Domain count: 2
- Matched identifier: HKOC_2910555
- Positioned domains: HisKA 46-109 ; HATPase_c 157-264
Cluster members and taxonomy
Representative gene: GCF_029541965#MJ646_RS02655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_029541965
AssemblyASM2954196v1 · Complete Genomehaploid
Genome composition2 296 011 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key