1 HAMP#1
50-119 aa · 70 aa · 19.7% of protein
Raw token
HAMP:50:0.0000000000274:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R19_RS11815
Histidine kinase, Classic
Bacillus sp. Cr_R16 · GCF_029222545
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029222545#P2R19_RS11815Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 355 aa (67.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.5% of protein
Raw token
HisKA:130:0.000000000000595:191:62:643 HATPase_c#3
242-350 aa · 109 aa · 30.7% of protein
Raw token
HATPase_c:242:5.72e-22:350:110:109- Raw architecture: HAMP:50:0.0000000000274:119:70:69#HisKA:130:0.000000000000595:191:62:64#HATPase_c:242:5.72e-22:350:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029222545::NZ_JARHXJ010000038.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53933-55688Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2R19_11815RefSeq proteinWP_275718986.1
Context group ID
GCF_029222545::NZ_JARHXJ010000038.1::G00033Context members
P2R19_RS11815P2R19_RS11820
Partner locus tags
P2R19_RS11815P2R19_RS11820
Partner old locus tags
P2R19_11815P2R19_11820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_275718986.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R19_RS11815Primary locus identifier stored in the genes table.
Old locus tagP2R19_11815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARHXJ010000038.1Sequence record reported by the local genomic context database.
Genomic interval53 933-55 000 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 933-55 688 ntGCF_029222545::NZ_JARHXJ010000038.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029222545::NZ_JARHXJ010000038.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARHXJ010000038.1All displayed genes belong to this local TCS context.
Neighborhood span53 933-55 688 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 933 nt55 688 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P2R19_RS11815GCF_029222545#P2R19_RS11815
HKClassicCurrent focus
53 933-55 000 nt · Reverse (-)
P2R19_RS11820GCF_029222545#P2R19_RS11820
RROmpR
54 990-55 688 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029222485#P2R17_RS15000Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2777638
Simplified PFAM architecture for HKOC_2777638
PFAM domain coverage: 223 / 355 aa (62.8%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[68-119] | HisKA[130-192] | HATPase_c[244-351]
- Domain count: 3
- Matched identifier: HKOC_2777638
- Positioned domains: HAMP 68-119 ; HisKA 130-192 ; HATPase_c 244-351
Cluster members and taxonomy
Representative gene: GCF_029222485#P2R17_RS15000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 020 · GCF_029222545
AssemblyASM2922254v1 · Contighaploid
Genome composition5 946 711 bp · 35,0% GCBacillus sp. Cr_R16
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key