1 HisKA_3#1
183-242 aa · 60 aa · 10.1% of protein
Raw token
HisKA_3:183:0.000000000000562:242:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R19_RS01560
Histidine kinase, Hybrid
Bacillus sp. Cr_R16 · GCF_029222545
ClassHKTypeHybridLength597 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029222545#P2R19_RS01560Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_cResponse_regHTH_LUXR
Protein length597 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage314 / 597 aa (52.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa597 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
289-374 aa · 86 aa · 14.4% of protein
Raw token
HATPase_c:289:1.18e-18:374:104:1093 Response_reg#3
384-495 aa · 112 aa · 18.8% of protein
Raw token
Response_reg:384:3.62e-32:495:112:1114 HTH_LUXR#4
536-591 aa · 56 aa · 9.4% of protein
Raw token
HTH_LUXR:536:4.59e-18:591:56:58- Raw architecture: HisKA_3:183:0.000000000000562:242:63:68#HATPase_c:289:1.18e-18:374:104:109#Response_reg:384:3.62e-32:495:112:111#HTH_LUXR:536:4.59e-18:591:56:58
- Domain description: 1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029222545::NZ_JARHXJ010000010.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span30484-32277Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2R19_01560RefSeq proteinWP_199677922.1
Context group ID
GCF_029222545::NZ_JARHXJ010000010.1::G00003Context members
P2R19_RS01560
Partner locus tags
P2R19_RS01560
Partner old locus tags
P2R19_01560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199677922.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R19_RS01560Primary locus identifier stored in the genes table.
Old locus tagP2R19_01560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARHXJ010000010.1Sequence record reported by the local genomic context database.
Genomic interval30 484-32 277 nt1 794 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 484-32 277 ntGCF_029222545::NZ_JARHXJ010000010.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029222545::NZ_JARHXJ010000010.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARHXJ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span30 484-32 277 nt1 794 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 484 nt32 277 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P2R19_RS01560GCF_029222545#P2R19_RS01560
HKHybridCurrent focus
30 484-32 277 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483525#JDS85_RS17075Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c + Response_reg + GerE4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1070879
Simplified PFAM architecture for HKOC_1070879
PFAM domain coverage: 312 / 597 aa (52.3%)
1 aa597 aa
HisKA_3HATPase_cResponse_regGerE
- Simplified architecture: HisKA_3 + HATPase_c + Response_reg + GerE
- Raw architecture: HisKA_3[183-244] | HATPase_c[289-373] | Response_reg[384-494] | GerE[537-590]
- Domain count: 4
- Matched identifier: HKOC_1070879
- Positioned domains: HisKA_3 183-244 ; HATPase_c 289-373 ; Response_reg 384-494 ; GerE 537-590
Cluster members and taxonomy
Representative gene: GCF_016483525#JDS85_RS17075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 020 · GCF_029222545
AssemblyASM2922254v1 · Contighaploid
Genome composition5 946 711 bp · 35,0% GCBacillus sp. Cr_R16
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key