1 Response_reg#1
5-112 aa · 108 aa · 50.5% of protein
Raw token
Response_reg:5:1.45e-37:112:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R19_RS06895
Response regulator NarL family
Bacillus sp. Cr_R16 · GCF_029222545
ClassRRTypeNarLLength214 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029222545#P2R19_RS06895Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 214 aa (75.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-204 aa · 53 aa · 24.8% of protein
Raw token
HTH_LUXR:152:3.37e-20:204:53:58- Raw architecture: Response_reg:5:1.45e-37:112:108:111#HTH_LUXR:152:3.37e-20:204:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029222545::NZ_JARHXJ010000027.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span105270-107121Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2R19_06895RefSeq proteinWP_063221991.1
Context group ID
GCF_029222545::NZ_JARHXJ010000027.1::G00025Context members
P2R19_RS06890P2R19_RS06895
Partner locus tags
P2R19_RS06890P2R19_RS06895
Partner old locus tags
P2R19_06890P2R19_06895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063221991.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B0XZA9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B0XZA9_BACANDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R19_RS06895Primary locus identifier stored in the genes table.
Old locus tagP2R19_06895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARHXJ010000027.1Sequence record reported by the local genomic context database.
Genomic interval106 477-107 121 nt645 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span105 270-107 121 ntGCF_029222545::NZ_JARHXJ010000027.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029222545::NZ_JARHXJ010000027.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARHXJ010000027.1All displayed genes belong to this local TCS context.
Neighborhood span105 270-107 121 nt1 852 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
105 270 nt107 121 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P2R19_RS06890GCF_029222545#P2R19_RS06890
HKClassic
105 270-106 487 nt · Forward (+)
P2R19_RS06895GCF_029222545#P2R19_RS06895
RRNarLCurrent focus
106 477-107 121 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619425#B4082_RS07175Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1938225
Simplified PFAM architecture for RROC_1938225
PFAM domain coverage: 166 / 214 aa (77.6%)
1 aa214 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[151-204]
- Domain count: 2
- Matched identifier: RROC_1938225
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 151-204 ; GerE 151-204
Cluster members and taxonomy
Representative gene: GCF_001619425#B4082_RS07175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 020 · GCF_029222545
AssemblyASM2922254v1 · Contighaploid
Genome composition5 946 711 bp · 35,0% GCBacillus sp. Cr_R16
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key