1 HAMP#1
51-129 aa · 79 aa · 22.0% of protein
Raw token
HAMP:51:0.000000003:129:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R19_RS05810
Histidine kinase, Classic
Bacillus sp. Cr_R16 · GCF_029222545
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029222545#P2R19_RS05810Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 359 aa (71.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
133-199 aa · 67 aa · 18.7% of protein
Raw token
HisKA:133:0.000000000000039:199:67:643 HATPase_c#3
243-352 aa · 110 aa · 30.6% of protein
Raw token
HATPase_c:243:1.77e-31:352:110:109- Raw architecture: HAMP:51:0.000000003:129:79:69#HisKA:133:0.000000000000039:199:67:64#HATPase_c:243:1.77e-31:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029222545::NZ_JARHXJ010000023.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71954-73707Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2R19_05810RefSeq proteinWP_063224190.1
Context group ID
GCF_029222545::NZ_JARHXJ010000023.1::G00021Context members
P2R19_RS05805P2R19_RS05810
Partner locus tags
P2R19_RS05805P2R19_RS05810
Partner old locus tags
P2R19_05805P2R19_05810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063224190.1Primary protein accession used for annex mappings.
UniProt accessionA0A164CUS4Primary UniProt accession resolved in the annex database.
UniProt IDA0A164CUS4_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R19_RS05810Primary locus identifier stored in the genes table.
Old locus tagP2R19_05810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARHXJ010000023.1Sequence record reported by the local genomic context database.
Genomic interval72 628-73 707 nt1 080 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 954-73 707 ntGCF_029222545::NZ_JARHXJ010000023.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029222545::NZ_JARHXJ010000023.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARHXJ010000023.1All displayed genes belong to this local TCS context.
Neighborhood span71 954-73 707 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 954 nt73 707 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P2R19_RS05805GCF_029222545#P2R19_RS05805
RROmpR
71 954-72 631 nt · Forward (+)
P2R19_RS05810GCF_029222545#P2R19_RS05810
HKClassicCurrent focus
72 628-73 707 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619425#B4082_RS21355Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2753763
Simplified PFAM architecture for HKOC_2753763
PFAM domain coverage: 176 / 359 aa (49.0%)
1 aa359 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[133-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2753763
- Positioned domains: HisKA 133-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_001619425#B4082_RS21355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 020 · GCF_029222545
AssemblyASM2922254v1 · Contighaploid
Genome composition5 946 711 bp · 35,0% GCBacillus sp. Cr_R16
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key