1 Response_reg#1
23-133 aa · 111 aa · 45.7% of protein
Raw token
Response_reg:23:2.62e-30:133:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
POG07_RS12005
Response regulator OmpR family
Coprococcus comes · GCF_028368575
ClassRRTypeOmpRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028368575#POG07_RS12005Stable P2CS identifier used across views.
GenomeGCF_028368575Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 243 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
165-241 aa · 77 aa · 31.7% of protein
Raw token
Trans_reg_C:165:4.6e-31:241:77:77- Raw architecture: Response_reg:23:2.62e-30:133:111:111#Trans_reg_C:165:4.6e-31:241:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028368575::NZ_JAQNCG010000031.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span41899-42630Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPOG07_11945RefSeq proteinWP_117843967.1
Context group ID
GCF_028368575::NZ_JAQNCG010000031.1::G00023Context members
POG07_RS12005
Partner locus tags
POG07_RS12005
Partner old locus tags
POG07_11945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117843967.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPOG07_RS12005Primary locus identifier stored in the genes table.
Old locus tagPOG07_11945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQNCG010000031.1Sequence record reported by the local genomic context database.
Genomic interval41 899-42 630 nt732 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 899-42 630 ntGCF_028368575::NZ_JAQNCG010000031.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028368575::NZ_JAQNCG010000031.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQNCG010000031.1All displayed genes belong to this local TCS context.
Neighborhood span41 899-42 630 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 899 nt42 630 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
POG07_RS12005GCF_028368575#POG07_RS12005
RROmpRCurrent focus
41 899-42 630 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028368575#POG07_RS12005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0835931
Simplified PFAM architecture for RROC_0835931
PFAM domain coverage: 186 / 243 aa (76.5%)
1 aa243 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[23-132] | Trans_reg_C[166-241]
- Domain count: 2
- Matched identifier: RROC_0835931
- Positioned domains: Response_reg 23-132 ; Trans_reg_C 166-241
Cluster members and taxonomy
Representative gene: GCF_028368575#POG07_RS12005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_028368575
AssemblyASM2836857v1 · Scaffoldhaploid
Genome composition3 405 481 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 80 · HK 37 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key