1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.00000011:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNW18_RS02290
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_028327425
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028327425#PNW18_RS02290Stable P2CS identifier used across views.
GenomeGCF_028327425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 343 aa (49.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:2.24e-27:341:101:109- Raw architecture: HisKA:123:0.00000011:189:67:64#HATPase_c:241:2.24e-27:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028327425::NZ_JAQMLK010000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91084-92804Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNW18_02290RefSeq proteinWP_009244709.1
Context group ID
GCF_028327425::NZ_JAQMLK010000002.1::G00025Context members
PNW18_RS02285PNW18_RS02290
Partner locus tags
PNW18_RS02285PNW18_RS02290
Partner old locus tags
PNW18_02285PNW18_02290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009244709.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NMS7Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NMS7_MEDG5Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNW18_RS02290Primary locus identifier stored in the genes table.
Old locus tagPNW18_02290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLK010000002.1Sequence record reported by the local genomic context database.
Genomic interval91 773-92 804 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 084-92 804 ntGCF_028327425::NZ_JAQMLK010000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327425::NZ_JAQMLK010000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLK010000002.1All displayed genes belong to this local TCS context.
Neighborhood span91 084-92 804 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 084 nt92 804 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PNW18_RS02285GCF_028327425#PNW18_RS02285
RROmpR
91 084-91 776 nt · Forward (+)
PNW18_RS02290GCF_028327425#PNW18_RS02290
HKClassicCurrent focus
91 773-92 804 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS00635Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828054
Simplified PFAM architecture for HKOC_2828054
PFAM domain coverage: 174 / 343 aa (50.7%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2828054
- Positioned domains: HisKA 124-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS00635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327425
AssemblyASM2832742v1 · Scaffoldhaploid
Genome composition3 484 075 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 86 · HK 41 · RR 44CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key