1 HAMP#1
166-233 aa · 68 aa · 14.7% of protein
Raw token
HAMP:166:0.000000000202:233:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNW18_RS01245
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_028327425
ClassHKTypeClassicLength463 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028327425#PNW18_RS01245Stable P2CS identifier used across views.
GenomeGCF_028327425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length463 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 463 aa (52.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa463 aa
Domain-by-domain annotation3 items
2 HisKA#2
237-302 aa · 66 aa · 14.3% of protein
Raw token
HisKA:237:0.000000000000115:302:66:643 HATPase_c#3
350-460 aa · 111 aa · 24.0% of protein
Raw token
HATPase_c:350:1.05e-32:460:111:109- Raw architecture: HAMP:166:0.000000000202:233:68:69#HisKA:237:0.000000000000115:302:66:64#HATPase_c:350:1.05e-32:460:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028327425::NZ_JAQMLK010000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span249418-251539Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNW18_01245RefSeq proteinWP_009243919.1
Context group ID
GCF_028327425::NZ_JAQMLK010000001.1::G00016Context members
PNW18_RS01245PNW18_RS01250
Partner locus tags
PNW18_RS01245PNW18_RS01250
Partner old locus tags
PNW18_01245PNW18_01250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009243919.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ3KLH8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ3KLH8_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNW18_RS01245Primary locus identifier stored in the genes table.
Old locus tagPNW18_01245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLK010000001.1Sequence record reported by the local genomic context database.
Genomic interval249 418-250 809 nt1 392 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span249 418-251 539 ntGCF_028327425::NZ_JAQMLK010000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327425::NZ_JAQMLK010000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span249 418-251 539 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
249 418 nt251 539 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PNW18_RS01245GCF_028327425#PNW18_RS01245
HKClassicCurrent focus
249 418-250 809 nt · Reverse (-)
PNW18_RS01250GCF_028327425#PNW18_RS01250
RROmpR
250 847-251 539 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS03315Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1796020
Simplified PFAM architecture for HKOC_1796020
PFAM domain coverage: 176 / 463 aa (38.0%)
1 aa463 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[238-302] | HATPase_c[350-460]
- Domain count: 2
- Matched identifier: HKOC_1796020
- Positioned domains: HisKA 238-302 ; HATPase_c 350-460
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS03315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327425
AssemblyASM2832742v1 · Scaffoldhaploid
Genome composition3 484 075 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 86 · HK 41 · RR 44CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key