1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:1.53e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNX04_RS08805
Response regulator NarL family
Mediterraneibacter gnavus · GCF_028327405
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028327405#PNX04_RS08805Stable P2CS identifier used across views.
GenomeGCF_028327405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 206 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.7% of protein
Raw token
HTH_LUXR:149:2.32e-22:201:53:58- Raw architecture: Response_reg:3:1.53e-26:103:101:111#HTH_LUXR:149:2.32e-22:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028327405::NZ_JAQMLH010000011.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2766-4095Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNX04_08810RefSeq proteinWP_004841403.1
Context group ID
GCF_028327405::NZ_JAQMLH010000011.1::G00003Context members
PNX04_RS08805PNX04_RS08810
Partner locus tags
PNX04_RS08805PNX04_RS08810
Partner old locus tags
PNX04_08810PNX04_08815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004841403.1Primary protein accession used for annex mappings.
UniProt accessionA7B070Primary UniProt accession resolved in the annex database.
UniProt IDA7B070_MEDG7Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNX04_RS08805Primary locus identifier stored in the genes table.
Old locus tagPNX04_08810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLH010000011.1Sequence record reported by the local genomic context database.
Genomic interval2 766-3 386 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 766-4 095 ntGCF_028327405::NZ_JAQMLH010000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327405::NZ_JAQMLH010000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLH010000011.1All displayed genes belong to this local TCS context.
Neighborhood span2 766-4 095 nt1 330 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 766 nt4 095 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PNX04_RS08805GCF_028327405#PNX04_RS08805
RRNarLCurrent focus
2 766-3 386 nt · Reverse (-)
PNX04_RS08810GCF_028327405#PNX04_RS08810
HKClassic
3 391-4 095 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS04135Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081114
Simplified PFAM architecture for RROC_2081114
PFAM domain coverage: 160 / 206 aa (77.7%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-109] | GerE[149-201]
- Domain count: 2
- Matched identifier: RROC_2081114
- Positioned domains: Response_reg 3-109 ; Response_reg 3-109 ; GerE 149-201 ; GerE 149-201
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS04135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327405
AssemblyASM2832740v1 · Scaffoldhaploid
Genome composition3 825 911 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 91 · HK 43 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key