1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:1.53e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMGNA_RS04135
Response regulator NarL family
Mediterraneibacter gnavus ATCC 29149 · GCF_000169475
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169475#RUMGNA_RS04135Stable P2CS identifier used across views.
GenomeGCF_000169475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 206 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.7% of protein
Raw token
HTH_LUXR:149:2.32e-22:201:53:58- Raw architecture: Response_reg:3:1.53e-26:103:101:111#HTH_LUXR:149:2.32e-22:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169475::NZ_AAYG02000009.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17663-18992Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMGNA_00946RefSeq proteinWP_004841403.1
Context group ID
GCF_000169475::NZ_AAYG02000009.1::G00039Context members
RUMGNA_RS04135RUMGNA_RS18015
Partner locus tags
RUMGNA_RS04135RUMGNA_RS18015
Partner old locus tags
RUMGNA_00946
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004841403.1Primary protein accession used for annex mappings.
UniProt accessionA7B070Primary UniProt accession resolved in the annex database.
UniProt IDA7B070_MEDG7Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMGNA_RS04135Primary locus identifier stored in the genes table.
Old locus tagRUMGNA_00946Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAYG02000009.1Sequence record reported by the local genomic context database.
Genomic interval17 663-18 283 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 663-18 992 ntGCF_000169475::NZ_AAYG02000009.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169475::NZ_AAYG02000009.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAYG02000009.1All displayed genes belong to this local TCS context.
Neighborhood span17 663-18 992 nt1 330 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 663 nt18 992 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMGNA_RS04135GCF_000169475#RUMGNA_RS04135
RRNarLCurrent focus
17 663-18 283 nt · Reverse (-)
RUMGNA_RS18015GCF_000169475#RUMGNA_RS18015
HKClassic
18 288-18 992 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS04135The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081114
Simplified PFAM architecture for RROC_2081114
PFAM domain coverage: 160 / 206 aa (77.7%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-109] | GerE[149-201]
- Domain count: 2
- Matched identifier: RROC_2081114
- Positioned domains: Response_reg 3-109 ; Response_reg 3-109 ; GerE 149-201 ; GerE 149-201
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS04135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_000169475
AssemblyASM16947v1 · Contighaploid
Genome composition3 501 911 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 81 · HK 39 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key