1 HisKA#1
411-478 aa · 68 aa · 10.6% of protein
Raw token
HisKA:411:0.00000000000341:478:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM725_RS02445
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_028314945
ClassHKTypeClassicLength639 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028314945#PM725_RS02445Stable P2CS identifier used across views.
GenomeGCF_028314945Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length639 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 639 aa (28.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
523-634 aa · 112 aa · 17.5% of protein
Raw token
HATPase_c:523:5.78e-27:634:112:109- Raw architecture: HisKA:411:0.00000000000341:478:68:64#HATPase_c:523:5.78e-27:634:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028314945::NZ_JAQLKH010000003.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span118240-120850Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM725_02445RefSeq proteinWP_272020802.1
Context group ID
GCF_028314945::NZ_JAQLKH010000003.1::G00017Context members
PM725_RS02440PM725_RS02445
Partner locus tags
PM725_RS02440PM725_RS02445
Partner old locus tags
PM725_02440PM725_02445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_272020802.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM725_RS02445Primary locus identifier stored in the genes table.
Old locus tagPM725_02445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLKH010000003.1Sequence record reported by the local genomic context database.
Genomic interval118 931-120 850 nt1 920 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span118 240-120 850 ntGCF_028314945::NZ_JAQLKH010000003.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028314945::NZ_JAQLKH010000003.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLKH010000003.1All displayed genes belong to this local TCS context.
Neighborhood span118 240-120 850 nt2 611 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
118 240 nt120 850 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PM725_RS02440GCF_028314945#PM725_RS02440
RROmpR
118 240-118 938 nt · Reverse (-)
PM725_RS02445GCF_028314945#PM725_RS02445
HKClassicCurrent focus
118 931-120 850 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028314945#PM725_RS02445The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0925453
Simplified PFAM architecture for HKOC_0925453
PFAM domain coverage: 285 / 639 aa (44.6%)
1 aa639 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[153-259] | HisKA[411-478] | HATPase_c[524-633]
- Domain count: 3
- Matched identifier: HKOC_0925453
- Positioned domains: DUF4118 153-259 ; HisKA 411-478 ; HATPase_c 524-633
Cluster members and taxonomy
Representative gene: GCF_028314945#PM725_RS02445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_028314945
AssemblyASM2831494v1 · Scaffoldhaploid
Genome composition3 503 162 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key