1 HisKA#1
184-249 aa · 66 aa · 14.7% of protein
Raw token
HisKA:184:0.0000000000048:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN34_RS03700
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_028314485
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028314485#PMN34_RS03700Stable P2CS identifier used across views.
GenomeGCF_028314485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 448 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 25.2% of protein
Raw token
HATPase_c:312:1.18e-29:424:113:109- Raw architecture: HisKA:184:0.0000000000048:249:66:64#HATPase_c:312:1.18e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028314485::NZ_JAQKQY010000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span761205-763320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN34_03700RefSeq proteinWP_271768685.1
Context group ID
GCF_028314485::NZ_JAQKQY010000001.1::G00009Context members
PMN34_RS03695PMN34_RS03700
Partner locus tags
PMN34_RS03695PMN34_RS03700
Partner old locus tags
PMN34_03695PMN34_03700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271768685.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN34_RS03700Primary locus identifier stored in the genes table.
Old locus tagPMN34_03700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQY010000001.1Sequence record reported by the local genomic context database.
Genomic interval761 974-763 320 nt1 347 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span761 205-763 320 ntGCF_028314485::NZ_JAQKQY010000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028314485::NZ_JAQKQY010000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span761 205-763 320 nt2 116 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
761 205 nt763 320 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN34_RS03695GCF_028314485#PMN34_RS03695
RROmpR
761 205-761 909 nt · Reverse (-)
PMN34_RS03700GCF_028314485#PMN34_RS03700
HKClassicCurrent focus
761 974-763 320 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028314485#PMN34_RS03700The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1994681
Simplified PFAM architecture for HKOC_1994681
PFAM domain coverage: 177 / 448 aa (39.5%)
1 aa448 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1994681
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_028314485#PMN34_RS03700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028314485
AssemblyASM2831448v1 · Scaffoldhaploid
Genome composition2 274 762 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key