1 HAMP#1
56-127 aa · 72 aa · 20.1% of protein
Raw token
HAMP:56:7.06e-18:127:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN34_RS01420
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_028314485
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028314485#PMN34_RS01420Stable P2CS identifier used across views.
GenomeGCF_028314485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 358 aa (69.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:0.00000000000000306:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.0% of protein
Raw token
HATPase_c:240:2.17e-22:350:112:109- Raw architecture: HAMP:56:7.06e-18:127:72:69#HisKA:131:0.00000000000000306:195:65:64#HATPase_c:240:2.17e-22:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028314485::NZ_JAQKQY010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span250112-251936Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN34_01415RefSeq proteinWP_271768304.1
Context group ID
GCF_028314485::NZ_JAQKQY010000001.1::G00002Context members
PMN34_RS01415PMN34_RS01420
Partner locus tags
PMN34_RS01415PMN34_RS01420
Partner old locus tags
PMN34_01410PMN34_01415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271768304.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN34_RS01420Primary locus identifier stored in the genes table.
Old locus tagPMN34_01415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQY010000001.1Sequence record reported by the local genomic context database.
Genomic interval250 860-251 936 nt1 077 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span250 112-251 936 ntGCF_028314485::NZ_JAQKQY010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028314485::NZ_JAQKQY010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span250 112-251 936 nt1 825 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
250 112 nt251 936 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN34_RS01415GCF_028314485#PMN34_RS01415
RROmpR
250 112-250 840 nt · Forward (+)
PMN34_RS01420GCF_028314485#PMN34_RS01420
HKClassicCurrent focus
250 860-251 936 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028314485#PMN34_RS01420The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2762489
Simplified PFAM architecture for HKOC_2762489
PFAM domain coverage: 231 / 358 aa (64.5%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2762489
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_028314485#PMN34_RS01420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028314485
AssemblyASM2831448v1 · Scaffoldhaploid
Genome composition2 274 762 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key