1 HisKA#1
59-124 aa · 66 aa · 23.7% of protein
Raw token
HisKA:59:0.000000278:124:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN34_RS02555
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_028314485
ClassHKTypeClassicLength279 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028314485#PMN34_RS02555Stable P2CS identifier used across views.
GenomeGCF_028314485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
External referencesMIST4 PMN34_RS02555MIST4
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length279 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 279 aa (59.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa279 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
177-277 aa · 101 aa · 36.2% of protein
Raw token
HATPase_c:177:2.83e-29:277:101:109- Raw architecture: HisKA:59:0.000000278:124:66:64#HATPase_c:177:2.83e-29:277:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028314485::NZ_JAQKQY010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span516454-518129Genomic interval covered by the local TCS group.
Context group ID
GCF_028314485::NZ_JAQKQY010000001.1::G00006Context members
PMN34_RS02555PMN34_RS02560
Partner locus tags
PMN34_RS02555PMN34_RS02560
Partner old locus tags
PMN34_02555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN34_RS02555Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQKQY010000001.1Sequence record reported by the local genomic context database.
Genomic interval516 454-517 485 nt1 032 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span516 454-518 129 ntGCF_028314485::NZ_JAQKQY010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028314485::NZ_JAQKQY010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span516 454-518 129 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
516 454 nt518 129 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN34_RS02555GCF_028314485#PMN34_RS02555
HKClassicCurrent focus
516 454-517 485 nt · Reverse (-)
PMN34_RS02560GCF_028314485#PMN34_RS02560
RROmpR
517 482-518 129 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022496265#LF917_RS02720Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2902595
Simplified PFAM architecture for HKOC_2902595
PFAM domain coverage: 172 / 279 aa (61.6%)
1 aa279 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[60-123] | HATPase_c[171-278]
- Domain count: 2
- Matched identifier: HKOC_2902595
- Positioned domains: HisKA 60-123 ; HATPase_c 171-278
Cluster members and taxonomy
Representative gene: GCF_022496265#LF917_RS02720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028314485
AssemblyASM2831448v1 · Scaffoldhaploid
Genome composition2 274 762 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key