1 HisKA_3#1
242-304 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:242:2.2e-18:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN34_RS01790
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_028314485
ClassHKTypeClassicLength869 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028314485#PMN34_RS01790Stable P2CS identifier used across views.
GenomeGCF_028314485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 869 aa (25.9%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa869 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.000000000000665:439:104:1093 HisKA_3#3
765-839 aa · 75 aa · 8.6% of protein
Raw token
HisKA_3:765:0.0000771:839:75:68- Raw architecture: HisKA_3:242:2.2e-18:304:63:68#HATPase_c:353:0.000000000000665:439:104:109#HisKA_3:765:0.0000771:839:75:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028314485::NZ_JAQKQY010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span336700-340131Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN34_01785RefSeq proteinWP_271768370.1
Context group ID
GCF_028314485::NZ_JAQKQY010000001.1::G00004Context members
PMN34_RS01790PMN34_RS01795
Partner locus tags
PMN34_RS01790PMN34_RS01795
Partner old locus tags
PMN34_01785PMN34_01790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271768370.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN34_RS01790Primary locus identifier stored in the genes table.
Old locus tagPMN34_01785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQY010000001.1Sequence record reported by the local genomic context database.
Genomic interval336 700-339 309 nt2 610 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span336 700-340 131 ntGCF_028314485::NZ_JAQKQY010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028314485::NZ_JAQKQY010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span336 700-340 131 nt3 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
336 700 nt340 131 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN34_RS01790GCF_028314485#PMN34_RS01790
HKClassicCurrent focus
336 700-339 309 nt · Forward (+)
PMN34_RS01795GCF_028314485#PMN34_RS01795
RRNarL
339 385-340 131 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028314485#PMN34_RS01790The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0460432
Simplified PFAM architecture for HKOC_0460432
PFAM domain coverage: 425 / 869 aa (48.9%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[555-690]
- Domain count: 4
- Matched identifier: HKOC_0460432
- Positioned domains: DUF7134 10-147 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 555-690
Cluster members and taxonomy
Representative gene: GCF_028314485#PMN34_RS01790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028314485
AssemblyASM2831448v1 · Scaffoldhaploid
Genome composition2 274 762 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key