1 Response_reg#1
12-97 aa · 86 aa · 41.1% of protein
Raw token
Response_reg:12:0.00000000000000438:97:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN36_RS03475
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_028310865
ClassRRTypeNarLLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028310865#PMN36_RS03475Stable P2CS identifier used across views.
GenomeGCF_028310865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage141 / 209 aa (67.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
147-201 aa · 55 aa · 26.3% of protein
Raw token
HTH_LUXR:147:2.82e-16:201:55:58- Raw architecture: Response_reg:12:0.00000000000000438:97:86:111#HTH_LUXR:147:2.82e-16:201:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028310865::NZ_JAQKRG010000002.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span138894-139523Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN36_03465RefSeq proteinWP_271745161.1
Context group ID
GCF_028310865::NZ_JAQKRG010000002.1::G00005Context members
PMN36_RS03475
Partner locus tags
PMN36_RS03475
Partner old locus tags
PMN36_03465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271745161.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN36_RS03475Primary locus identifier stored in the genes table.
Old locus tagPMN36_03465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKRG010000002.1Sequence record reported by the local genomic context database.
Genomic interval138 894-139 523 nt630 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span138 894-139 523 ntGCF_028310865::NZ_JAQKRG010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028310865::NZ_JAQKRG010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKRG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span138 894-139 523 nt630 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 894 nt139 523 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMN36_RS03475GCF_028310865#PMN36_RS03475
RRNarLCurrent focus
138 894-139 523 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028310865#PMN36_RS03475The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2051058
Simplified PFAM architecture for RROC_2051058
PFAM domain coverage: 145 / 209 aa (69.4%)
1 aa209 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-102] | GerE[148-201]
- Domain count: 2
- Matched identifier: RROC_2051058
- Positioned domains: Response_reg 12-102 ; GerE 148-201
Cluster members and taxonomy
Representative gene: GCF_028310865#PMN36_RS03475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028310865
AssemblyASM2831086v1 · Scaffoldhaploid
Genome composition2 224 649 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key