1 HAMP#1
130-197 aa · 68 aa · 15.7% of protein
Raw token
HAMP:130:0.00003:197:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM004_RS09040
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210495
ClassHKTypeClassicLength433 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210495#PM004_RS09040Stable P2CS identifier used across views.
GenomeGCF_028210495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length433 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 433 aa (56.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa433 aa
Domain-by-domain annotation3 items
2 HisKA#2
211-276 aa · 66 aa · 15.2% of protein
Raw token
HisKA:211:9.14e-17:276:66:643 HATPase_c#3
324-433 aa · 110 aa · 25.4% of protein
Raw token
HATPase_c:324:2.44e-17:433:111:109- Raw architecture: HAMP:130:0.00003:197:68:69#HisKA:211:9.14e-17:276:66:64#HATPase_c:324:2.44e-17:433:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210495::NZ_JAQLHL010000007.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span135575-137559Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM004_09050RefSeq proteinWP_271841703.1
Context group ID
GCF_028210495::NZ_JAQLHL010000007.1::G00034Context members
PM004_RS09035PM004_RS09040
Partner locus tags
PM004_RS09035PM004_RS09040
Partner old locus tags
PM004_09045PM004_09050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271841703.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM004_RS09040Primary locus identifier stored in the genes table.
Old locus tagPM004_09050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHL010000007.1Sequence record reported by the local genomic context database.
Genomic interval136 258-137 559 nt1 302 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span135 575-137 559 ntGCF_028210495::NZ_JAQLHL010000007.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210495::NZ_JAQLHL010000007.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHL010000007.1All displayed genes belong to this local TCS context.
Neighborhood span135 575-137 559 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 575 nt137 559 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PM004_RS09035GCF_028210495#PM004_RS09035
RROmpR
135 575-136 261 nt · Forward (+)
PM004_RS09040GCF_028210495#PM004_RS09040
HKClassicCurrent focus
136 258-137 559 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028210495#PM004_RS09040The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2146731
Simplified PFAM architecture for HKOC_2146731
PFAM domain coverage: 214 / 433 aa (49.4%)
1 aa433 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[159-197] | HisKA[211-276] | HATPase_c[324-432]
- Domain count: 3
- Matched identifier: HKOC_2146731
- Positioned domains: HAMP 159-197 ; HisKA 211-276 ; HATPase_c 324-432
Cluster members and taxonomy
Representative gene: GCF_028210495#PM004_RS09040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210495
AssemblyASM2821049v1 · Scaffoldhaploid
Genome composition3 575 990 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key