1 HAMP#1
159-222 aa · 64 aa · 14.0% of protein
Raw token
HAMP:159:0.0000165:222:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ79_RS10400
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210315
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210315#PMZ79_RS10400Stable P2CS identifier used across views.
GenomeGCF_028210315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 457 aa (50.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
235-294 aa · 60 aa · 13.1% of protein
Raw token
HisKA:235:0.000000000000673:294:60:643 HATPase_c#3
350-457 aa · 108 aa · 23.6% of protein
Raw token
HATPase_c:350:5.38e-22:457:108:109- Raw architecture: HAMP:159:0.0000165:222:66:69#HisKA:235:0.000000000000673:294:60:64#HATPase_c:350:5.38e-22:457:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210315::NZ_JAQLHG010000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span99943-102007Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ79_10410RefSeq proteinWP_055183845.1
Context group ID
GCF_028210315::NZ_JAQLHG010000010.1::G00002Context members
PMZ79_RS10395PMZ79_RS10400
Partner locus tags
PMZ79_RS10395PMZ79_RS10400
Partner old locus tags
PMZ79_10405PMZ79_10410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055183845.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ79_RS10400Primary locus identifier stored in the genes table.
Old locus tagPMZ79_10410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHG010000010.1Sequence record reported by the local genomic context database.
Genomic interval100 634-102 007 nt1 374 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span99 943-102 007 ntGCF_028210315::NZ_JAQLHG010000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210315::NZ_JAQLHG010000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHG010000010.1All displayed genes belong to this local TCS context.
Neighborhood span99 943-102 007 nt2 065 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 943 nt102 007 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMZ79_RS10395GCF_028210315#PMZ79_RS10395
RROmpR
99 943-100 644 nt · Forward (+)
PMZ79_RS10400GCF_028210315#PMZ79_RS10400
HKClassicCurrent focus
100 634-102 007 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS04995Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1875211
Simplified PFAM architecture for HKOC_1875211
PFAM domain coverage: 169 / 457 aa (37.0%)
1 aa457 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-297] | HATPase_c[350-456]
- Domain count: 2
- Matched identifier: HKOC_1875211
- Positioned domains: HisKA 236-297 ; HATPase_c 350-456
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS04995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210315
AssemblyASM2821031v1 · Scaffoldhaploid
Genome composition3 618 798 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key